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>COG0003 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0365G VNG7123 MTH1511 MJ1142 MK1680 Ta0437 TVN0026 TVN1056 PAB1555 PAE1427 APE2164 APE2165 YDL100c SPAC1142.06 aq_343 aq_682 FN1537 FN1538 Rv2184c Rv3680 MT2239 MT3782 ML0890 ML2306 pli0037 BH1795 sll0086 slr1794 all2244 all2700 all4481 CLUSTER 2 Rv3679 MT3781 ML2305 >COG0004 (Putative duplication confidence score 0.500) CLUSTER 1 AF0977 AF1746 AF1749 MA3917 MA3918 MA4207 MTH661 MTH663 MJ0058 MJ1343 MK0053 Ta0181a SSO1054 YGR121c YNL142w YPR138c SPAC2E1P3.02c SPAC664.14 SPCPB1C11.01 aq_112 TM0402 DR0693 CAC0682 Cgl1545 Cgl2012 Rv2920c MT2988 L0236 SA1848 lin1551 BS_nrgA BH3834 sll0108 sll0537 sll1017 alr0990 alr0991 alr0992 amtB ZamtB ECs0505 YPO3142 STM0463 PA3039 PA5287 XF1844 NMB0615 NMA0820 RSc0343 AGc5001 SMc03807 BMEI0167 mll4246 CC1338 UU218 UU219 CLUSTER 2 Ta0181m TVN1042 >COG0008 (Putative duplication confidence score 0.548) CLUSTER 1 AF0260 VNG1153G MA0587 MTH51 MJ1377 MK0757 Ta0942 TVN1086 PH1686 PAB0323 PAE2969 SSO0093 APE2317 YGL245w YOR168w SPAC17A5.15c SPBC342.02 ECU02g1210 ECU10g1460 DR2611_1 glnS ZglnS ECs0710 YPO2630 STM0686 BU415 VC0997 PA1794 HI1354 PM0528 XF1338 NMB1560 NMA1748 RSc0791 CLUSTER 2 YOL033w SPAPB1A10.11c aq_1221 TM1351 TM1875 FN1340 DR0485 DR1687 CAC0990 Cgl0237 Cgl1263 Rv2992c MT3070 ML1688 L0349 SPy0239 SP2069 SA0486 lin0269 BS_gltX BH0109 sll0179 all3205 gltX yadB ZgltX ZyadB ECs0148 ECs3278 YPO2984 YPO3398 STM0185 STM2415 BU070 VC0595 VC2214 PA3134 PA4724 HI0274 PM1115 XF0822 NMB0003 NMB0349 NMA0250 NMA2138 RSc1179 RSc2210 HP0476 HP0643 jhp0428 jhp0588 Cj0845c Cj1288c AGl2475 AGl791 SMc00735 SMc03172 BMEI0381 BMEI0837 BMEI0968 mll0813 mlr0628 mlr3479 CC1905 CC2205 RP325 RP623 RC0448 RC0966 CT445 CPn0560 TP0673 BB0372 UU599 MYPU_6820 MPN678 MG462 >COG0014 (Putative duplication confidence score 1.000) CLUSTER 1 MA4100 YOR323c SPAC821.11 aq_1071 TM0293 DR1826 CAC3254 Cgl2303 Rv2427c MT2500 ML1458 L0116 SPy1670 SP0932 lin1227 BS_proA BH1504 sll0373 all2166 proA ZproA ECs0270 YPO3221 STM0322 VC2273 PA4007 HI1239 PM0936 XF1005 NMB1068 NMA1267 RSc2741 Cj0558c AGc5042 SMc03777 BMEI0208 mll4009 CC3430 TP0350 CLUSTER 2 sll0461 alr3995 >COG0017 (Putative duplication confidence score 1.000) CLUSTER 1 AF0920 VNG0461G MA1684 MTH226 MJ1555 MK0710 Ta0519 Ta0946 TVN0996 TVN1090 PH0241 PH1020 PAB0646 PAB2203 PAE0703 PAE2973 SSO0173 APE2192 YCR024c YHR019c YLL018c SPBC1198.10c SPBC1773.10c SPCC1223.07c ECU06g0790 ECU09g1680 FN0040 DR1055 DR1270 CAC2979 CAC3260 CAC3564 L0345 SPy0559 SPy0651 SP1542 SA1287 lin2010 BS_asnS BH1696 sll0495 alr3658 asnS ZasnS ECs1013 YPO1412 STM1000 BU360 VC1297 HI1302 PM0643 XF2563 TP0609 BB0101 UU365 MYPU_7710 MPN252 MG113 CLUSTER 2 Ta0609m TVN0659 PH0270 PAB2356 PAE2557 >COG0019 (Putative duplication confidence score 1.000) CLUSTER 1 AF0800 MA0726 MA2728 MTH1335 MJ1097 MK0483 Ta0788m TVN0806 YKL184w SPAC144.04c aq_1208 aq_728 TM1517 TM1873 DR1758 CAC0608 Cgl1154 Cgl2084_2 Rv1293 MT1332 ML1128 L0121 SP0166 SP1978 SA0119 SA1232 lin2066 BS_lysA BH1544 sll0504 all2997 lysA ZlysA ECs3695 YPO0796 STM2360 STM3013 BU438 VC0125 PA4519 PA5277 HI0727 PM1424 XF1116_2 NMB1976 NMA0468 RSc2979 RSp0424 RSp0679 HP0290 jhp0275 Cj0314 AGc3079 AGl2454 AGl3227 SMc00723 SMc02983 BMEI0084 BMEII1133 mll1584 mll2974 mlr3508 CC0360 CC2213 CLUSTER 2 DR1410 SP0920 BH3958 sll0873 VC1623 PM0371 HP0020 jhp0018 Cj1515c AGl1366 SMb21631 BMEI1589 >COG0020 (Putative duplication confidence score 1.000) CLUSTER 1 AF0707 AF1219 VNG1779C VNG1781C MA1831 MA3723 MA4402 MTH232 MJ1372 MK0767 Ta0546 TVN0600 PH1590 PAB0394 PAE2942 SSO0163 APE1385 YBR002c YMR101c SPAC4D7.04c ECU09g1870 aq_1248 TM1398 FN1326 DR2447 CAC1432 CAC1791 Cgl0966 Cgl2231 Rv1086 Rv2361c MT1118 MT1118.2 MT2430 ML0634 ML2467 L183602 SPy1965 SP0261 SA1103 lin1352 BS_yluA BH2423 sll0506 all2995 all3432 yaeS ZyaeS ECs0176 YPO1049 STM0221 BU236 VC2256 PA3652 HI0920 PM1989 XF1050 NMB0186 NMA0081 RSc1408 HP1221 jhp1142 Cj0824 AGc2550 SMc02097 BMEI0827 mll0640 CC1919 RP425 RC0590 CT450 CPn0566 TP0603 BB0120 CLUSTER 2 YDL193w_2 SPBC2A9.06c >COG0021 (Putative duplication confidence score 0.500) CLUSTER 1 YBR117c YPR074c SPBC2G5.05 ECU06g0120 aq_1765 DR2256 CAC0944 CAC1348 Cgl1536 Rv1449c MT1496 ML0583 L0043 SPy1676 SP2030 SA1177 lin0360 lin1343 lin2809 BS_tkt BH2352 sll1070 alr3344 tktA tktB ZtktA ZtktB ECs3327 ECs3810 YPO0926 STM2474 STM3076 BU094 VC0473 VCA0624 PA0548 HI1023 PM1242 PM1638 XF1936 NMB1457 NMA1669 RSc2750 HP1088 jhp0337 Cj1645 AGl2197 SMb20200 SMc02342 SMc03978 BMEI0311 mlr3749 CC3620 CT750 CPn0893 TP0560 UU586 MYPU_5110 MPN082 MG066 CLUSTER 2 TM1762 all4052 >COG0022 (Putative duplication confidence score 1.000) CLUSTER 1 VNG2218G Ta1437 TVN0101 PAE2646 SSO1370 SSO1526 APE1674 YBR221c SPBC30D10.13c ECU04g1160 DR0030 Rv2496c MT2571 L0034 SPy1028 SP1163 SA0944 SA1347 lin1045 lin1410 BS_acoB BS_bfmBAB BS_pdhB BH0214 BH0777 BH1823 BH2654 BH2762 sll1721 all0122 PA2248 PA3416 PA4151 RSc1798 AGc2638_2 AGl2718 SMb20020_2 SMc01031_2 SMc03202 BMEI0855_2 BMEII0747 mll3628 mll4472 mlr0384_2 CC1727_2 RP262 RC0348 CT246 CT340_2 CPn0033_2 CPn0305 MYPU_7630 MPN392 MG273 CLUSTER 2 BMEII0061_2 BMEII0216_2 >COG0031 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0606G VNG1301G MA2720 Ta0535 TVN0589 PAB0250 PAE1051 SSO0360 APE1223 APE1586 YGR012w YGR155w_1 SPAC3A12.17c SPBC36.04 aq_1556 TM0665 FN1055 FN1220 DR0789 CAC0931 CAC2235 Cgl2085 Cgl2508 Rv0848 Rv1077_1 Rv1336 Rv2334 MT1108_1 MT1377 MT2397 ML0839 ML2396_1 L0088 L0089 SPy1618 SP2210 SA0112 SA0418 SA0471 lin0255 BS_cysK BS_yrhA BS_ytkP BH0088 BH3271 sll0712 slr1842 all1169 all2521 alr4416 alr4552 alr7586 cysK cysM ZcysK ZcysM ECs3286 ECs3292 YPO2992 YPO3011 YPO4018 STM2430 STM2440 BU066 VC0537 VC0968 PA0399_1 PA0932 PA2104 PA2709 HI1103 PM1693 XF0603_1 XF0831 NMB0763 NMA0974 RSc0917 RSp0276 RSp0417 HP0107 jhp0099 Cj0912c AGc2247 AGc543 SMc00421 SMc01174 BMEI0101 BMEI0933 mll4505_1 mll4616 mll9227 mlr0353 mlr4651 mlr9541 CC1426 CC3625 CLUSTER 2 Rv3684 MT3786 YPO3147 STM0458 VC1061 PA1061 XF0128 >COG0044 (Putative duplication confidence score 0.500) CLUSTER 1 AF2250 VNG2533G MA0892 MTH1127 MJ1490 MK0530 Ta1319 TVN0269 PH1963 PAB1149 PAE0322 SSO0611 APE0261 YIR027c aq_806 TM0335 FN0420 DR1106 DR1153 CAC0519 Cgl1573 Rv1381 MT1425 ML0533 L81189 SPy0907 SP1167 SA1044 lin1951 BS_pyrC BS_yunH BH2309 BH2538 sll1018 all2303 alr3339 alr5010 ybbX ygeZ Z0666 Z0667 Z4212 ECs0573 ECs0574 ECs3746 STM0523 PA0401 PA0441 PA5541 XF0988 RSc0679 HP0266 jhp0251 Cj1195c AGc2404 AGc4328 SMa0552 SMc01361 SMc01821 BMEI1281 BMEI1644 BMEII0669 mll1629 mlr0687 mlr7790 CC0388 CC2444 CLUSTER 2 YJL130c_3 SPAC22G7.06c_3 >COG0045 (Putative duplication confidence score 1.000) CLUSTER 1 AF1540 AF2186 VNG1541G MTH1036 MJ0210 MK0731 Ta1332m TVN0274 PAE2312 SSO2483 APE1065 YGR244c SPCC1620.08 aq_1306 aq_1620 DR1247 Cgl2512 Rv0951 MT0978 ML0155 SA1088 BS_sucC BH2470 sll1023 all3914 sucC ZsucC ECs0753 YPO1115 STM0738 VC2085 PA1588 HI1196 PM0280 XF2547 NMB0959 NMA1153 RSc0554 Cj0533 AGc4780 SMc02480 BMEI0138 mll4306 mlr1324 CC0337 RP433 RC0599 CT821 CPn0973 CLUSTER 2 SPAC22A12.16 >COG0055 (Putative duplication confidence score 1.000) CLUSTER 1 MA2441 YJR121w SPAC222.12c aq_2038 TM1610 FN0358 CAC2865 Cgl1185 Rv1310 MT1350 ML1145 L6563 SPy0760 SP1508 SA1905 lin0138 lin2673 BS_atpD BH3754 slr1329 all5039 atpD ZatpD ECs4674 YPO4121 STM3865 BU008 VC2764 PA5554 HI0479 PM1494 XF1143 NMB1934 NMA0519 RSc3317 HP1132 jhp1060 Cj0107 AGc4754 SMc02501 BMEI0251 mll4060 CC3447 RP801 RC1235 UU129 MYPU_2360 MYPU_2660 MPN598 MG399 CLUSTER 2 UU054 MYPU_4500 MYPU_6990 >COG0056 (Putative duplication confidence score 1.000) CLUSTER 1 MA2434 YBL099w SPAC14C4.14 aq_679 TM1612 FN0360 CAC2867 Cgl1183 Rv1308 MT1348 ML1143 L8990 SPy0758 SP1510 SA1907 lin0136 lin2675 BS_atpA BH3756 sll1326 all0005 atpA ZatpA ECs4676 YPO4123 STM3867 BU006 VC2766 PA5556 HI0481 PM1492 XF1145 NMB1936 NMA0517 RSc3319 HP1134 jhp1062 Cj0105 AGc4757 SMc02499 BMEI0249 mll4065 CC3449 RP803 RC1237 UU132_1 MYPU_2680 MPN600 MG401 CLUSTER 2 UU053 MYPU_2350 MYPU_4490 MYPU_7000 >COG0063 (Putative duplication confidence score 1.000) CLUSTER 1 AF0851_2 VNG1272C_2 MA1170_2 MTH1256_2 MJ1586_2 MK0808_2 Ta1451_2 TVN0127_2 PH1950_2 PAB1144_2 PAE2520_2 SSO2254_2 APE2362_2 YKL151c SPCC61.03 ECU03g1390 aq_1365_2 TM0922_2 DR1529_2 CAC0490_2 Cgl0579_2 Rv3433c_2 MT3539_2 ML0373_2 L57608 SA0007 lin1663 BS_yxkO sll1433_2 alr2957_2 yjeF_2 ZyjeF_2 ECs5142_2 YPO0368_2 STM4356_2 VCA0191_2 PA4949_2 XF0757_2 NMB1159 NMB1197 NMA1369 RSc1720_2 HP1363_2 jhp1281_2 Cj0188c_2 AGc3249_2 SMc00946_2 BMEI0977_2 mlr0346_2 CC1965_2 CLUSTER 2 MJ1337 MK0264 >COG0068 (Putative duplication confidence score 1.000) CLUSTER 1 AF1366 MA4161 MTH1287 MJ0713 MK0648 PH0897 PAB1560 aq_672 CAC0810 CAP0146 sll0322 alr0694 hypF ZhypF ECs3568 STM2842 HP0048 jhp0041 Cj0622 CLUSTER 2 MA0506 >COG0069 (Putative duplication confidence score 1.000) CLUSTER 1 AF0953_2 MA4218_2 MTH105_2 MTH1666 MTH194_2 MJ1351_2 MK0550 PAE3444 SSO0684 YDL171c_2 SPAPB1E7.07_2 aq_1565_2 TM0397_2 DR0183_2 CAC1673_2 Cgl0184_2 Rv3859c_2 MT3974_2 ML0061_2 L0119_2 SA0430_2 SA2248 lin1845_2 BS_gltA_2 BS_yerD BH1728_2 sll1499_2 sll1502_2 alr4344_2 gltB_2 ZgltB_2 ECs4091_2 YPO3557_2 STM3330_2 VC2373_2 VC2376_2 PA3602 PA5036_2 XF2710_2 RSc2722 RSc2965_2 Cj0007_2 AGc235_2 AGl1265 AGl2101_2 SMc02612 SMc04028_2 BMEII0040_2 mll3030_2 mll7308 CC3607_2 CLUSTER 2 TM1058 >COG0074 (Putative duplication confidence score 1.000) CLUSTER 1 AF1539 AF2185 VNG1542G MTH563 MJ1246 MK0732 Ta1331 TVN0273 PAE2313 SSO2482 APE1072 YOR142w SPAC16E8.17c SPBC1703.07_1 aq_1622 aq_1888 DR1248 Cgl2511 Rv0952 MT0979 ML0156 SA1089 BS_sucD BH2469 sll1557 all3913 sucD ZsucD ECs0754 YPO1116 STM0739 VC2084 PA1589 HI1197 PM0281 XF2548 NMB0960 NMA1154 RSc0555 Cj0534 AGc4779 SMc02481 BMEI0139 mll4303 mlr1326 CC0338 RP432 RC0598 CT822 CPn0974 CLUSTER 2 fdrA yahF ZfdrA ZyahF ECs0369 ECs0580 STM0529 >COG0075 (Putative duplication confidence score 0.500) CLUSTER 1 AF1417 VNG2418G MA1816 MTH1601 MJ0959 MK0633 Ta1018 TVN0571 PH1308 PAB1801 PAE3321 PAE3447 SSO0906 SSO2597 APE2423 YFL030w aq_1591 aq_1593 TM1400 DR0991 DR1350 DR2465 CAC0014 CAC0221 L86881 SA1544 BS_yurG BH0762 sll1559 alr1004 VC0392 HP0736 jhp0673 AGl3195 SMa1495 SMa2139 mlr1322 mlr6806 CC2604 CLUSTER 2 STM0431 VCA0604 PA1310 SMb21537 >COG0076 (Putative duplication confidence score 1.000) CLUSTER 1 AF1323 AF2004 AF2295 VNG0327G VNG6211G MA0006 MA1949 MTH1116 MJ0050 MK1500 PH0937 PAB1578 APE0020 APE0412 APE2267 YDR294c YMR250w Rv3432c MT3538 L123581 lin2463 lin2528 BH0566 BH2623 sll1641 all0395 gadA gadB ZgadA ZgadB ECs2098 ECs4397 YPO1193 YPO1529 VC1149 VCA0269 HI0946.1 SMa2402 SMb21414 BMEII0910 BMEII0911 mll0712 mlr4653 mlr6209 CLUSTER 2 MJ0610 MK0672 >COG0078 (Putative duplication confidence score 1.000) CLUSTER 1 AF1255 VNG6315G MA3310 MTH1446 MJ0881 MK1070 Ta1330 TVN0272 PH0726 PAB1502 PAE1985 SSO0871 APE1992 YJL088w SPAC4G9.10 aq_1711 TM1097 DR0080 CAC0316 Cgl1006 Cgl1365 Rv1656 MT1694 ML1410 L0108 L0109 L0113 SPy1544 SP2150 SA1012 SA2427 lin1629 BS_argF BH2894 sll0902 alr4907 argF argI ZargI ECs5231 YPO3446 STM4465 STM4469 BU368 VC2508 PA3537 PA5172 HI0596 PM0808 XF0998 NMB1573 NMA1762 RSc2554 Cj0994c AGc755 SMa0695 SMc02137 BMEI1620 mlr5647 CC2242 BB0842 MPN306 CLUSTER 2 ygeW Z4209 ECs3743 >COG0115 (Putative duplication confidence score 1.000) CLUSTER 1 AF0933 VNG0387G VNG2122G MA4349 MTH1430 MJ1008 MK1627 PAE3297 YHR208w YJR148w SPBC19G7.02 SPBC428.02c aq_1606 aq_1893 TM0831 FN1729 DR0195 DR1626 CAC0792 CAC1479 CAC2226 Cgl0800 Cgl0971 Cgl2155 Cgl2526 Rv0812 Rv2210c MT0833 MT2266 ML0866 L0086 L0179_2 SPy0911 SPy1990_2 SP0665_2 SP0856 SA0512 SA0670 SA1571 lin0977 lin1660 lin2893_2 BS_pabC BS_ybgE BS_yheM BS_ywaA BH0092 BH2156 BH2811 slr0032 slr0887 alr1260 ilvE pabC ZilvE ZpabC ECs1474 ECs4704 YPO1603 YPO3899 STM1198 STM3903 VC0029 VC2018 PA2964 PA5013 HI1169 HI1193 PM0566 PM1465 XF0075 XF1999 NMB0337 NMB1970_2 NMA0477_2 NMA2151 RSc0567 RSc2633_2 RSp0714 RSp1327 RSp1358 HP0293_2 HP1468 jhp0278_2 jhp1361 Cj0269c Cj0862c_2 AGc1592 AGc4563 AGl2139 AGpA698 SMa0093 SMc00042 SMc01047 SMc02896 SMc04014 BMEII0014 BMEII0363 BMEII0612 BMEII0613 mll2664 mll9205 mlr0401 mlr1594 mlr3007 mlr7635 CC1744 CC2929 CC2952 RP428 RC0594 CLUSTER 2 YMR289w >COG0119 (Putative duplication confidence score 0.846) CLUSTER 1 AF0219 AF0957 MA1225 MA1226 MA3342 MA3793 MA4264 MA4615 MTH1481 MTH1630 MTH723 MJ0503 MJ1195 MJ1392 MK0275 MK0391 MK1209 TVN0909 PH1727 PAB0286 PAB0890 PAB0894 PAE1330 PAE1986 PAE1993 SSO0127 SSO0977 SSO2407 YDL131w YDL182w SPBC1105.02c aq_2090 aq_356 TM0552 TM0553 DR1238 DR1482 CAC0260 CAC0261 CAC0970 CAC3174 Rv3469c Rv3534c MT3575 MT3638 SP1258 SA0837 SA1862 lin2094 BS_leuA BS_yngG BH1134 BH3058 sll1564 slr0186 alr1407 alr2968 alr3522 alr4840 leuA mhpE ZleuA ZmhpE ECs0078 ECs0407 YPO0533 STM0113 BUpL04 VC2490 PA1217 PA2011 HI0986 PM1962 XF1818 NMB1070 NMA1270 RSc0261 RSc2072 RSp0895 Cj1719c AGl2702 SMb21125 SMc02546 BMEI1270 BMEI1926 mlr7805 CC0467 CC1541 CLUSTER 2 YNL104c YOR108w SPBC3E7.16c CAC0273 Cgl0250 Rv3710 MT3813 ML2324 PA3792 RSp0322 AGc4114 SMc02717 BMEI0451 mlr2792 >COG0125 (Putative duplication confidence score 1.000) CLUSTER 1 AF0061 AF1308 VNG1929G MA4433 MTH1100 MTH1765 MJ0293 MK0101 Ta0081 TVN0173 PH1695 PAB0319 PAE0964 SSO0780 SSO1191 SSO1192 APE2090 YJR057w SPCC70.07c ECU04g1220 aq_969 TM1099 FN1323 DR0111 Cgl0730 Rv3247c MT3345 ML0772 L3846 SPy0399 SP0935 SA0440 lin2841 BS_tmk BH0042 slr0379 all4708 tmk Ztmk ECs1476 YPO1605 STM1200 BU353 VC2016 PA2962 HI0456 PM1673 XF0580 NMB0670 NMA0869 RSc1784 HP1474 jhp1367 Cj0766c AGc2760 SMc01189 BMEI0989 mll0424 CC1824 RP684 RC1047 CT188 CPn0273 TP0354 BB0793 UU020 MYPU_0520 MPN006 MG006 CLUSTER 2 MA2176 >COG0129 (Putative duplication confidence score 0.889) CLUSTER 1 AF1014 MA1802 MA3373 MTH1449 MJ1276 MK1197 PAB0895 PAE0615 SSO3107 APE0013 YJR016c SPAC17G8.06c aq_837 TM0551 DR1132 CAC3170 CAC3604 Cgl1238 Rv0189c MT0199 ML2608 L0077 SP2126 SA1858 lin2090 BS_ilvD BH3062 slr0452 alr2771 ilvD yagF yjhG ZilvD ECs4705 YPO3897 STM3531 STM3904 BU600 VC0028 PA0353 HI0738 PM1625 XF0099 NMB1150 NMB1188 NMA1361 RSc2412 Cj0013 AGc3510 AGc4959 AGl1769 AGl3190 SMa0235 SMb20115 SMb20890 SMc00884 SMc04045 SMc04144 BMEI1848 BMEII0356 mll1102 mll7192 mlr5361 mlr5404 CC0819 CC1421 CC3044 CLUSTER 2 edd Zedd ECs2561 YPO2533 STM1885 VC0288 PA3194 XF1062 NMB1393 NMA1610 RSp1560 HP1100 jhp1026 AGc1060 SMc03068 BMEII0511 mll6512 CC2055 >COG0130 (Putative duplication confidence score 1.000) CLUSTER 1 AF0238 VNG1729G MA1105 MTH32 MJ0148 MK0133 Ta1244 TVN0352 PH1644 PAB0356 PAE0865 SSO0393 APE0990 YLR175w YNL292w SPAC29A4.04c SPBC11C11.10 ECU05g1020 aq_705 TM0856 FN0635 DR1323 CAC1805 Cgl1933 Rv2793c MT2862.1 ML1546 L0328 SPy1251 SP1212 SA1114 lin1365 BS_truB BH2410 slr0457 alr1543 truB ZtruB ECs4047 YPO3494 STM3284 BU375 VC0645 PA4742 HI1289 PM0756 XF0237 NMB1374 NMA1588 RSc1291 Cj1102 AGc127 SMc00321 BMEI1963 mlr5558 CC0036 RP501 RP502 RC0665 CT094 CPn0319 TP0889 BB0803 UU354 MYPU_5500 CLUSTER 2 SSO5761 APE0989 >COG0136 (Putative duplication confidence score 0.692) CLUSTER 1 AF1506 VNG1435G MA0430 MTH799 MJ0205 MK1389 Ta0363 PH1088 PAB1678 PAE2876 SSO0874 SSO2178 APE1143 YDR158w SPCC1827.06c aq_1866 TM1523 DR2008 CAC0022 CAC0568 Cgl0253 Rv3708c MT3811 ML2322 L66199 SP1013 SA1226 lin1476 BS_asd BH2401 slr0549 all3680 usg Zusg ECs3203 YPO2765 STM2369 VC2107 PA3116 HI1433 PM0486 XF1371 HP1189 jhp1114 Cj1023c AGc4523 SMc04410 BMEII0407 mll4392 CC0253 CC3485 RP316 RC0430 CT363 CPn1048 CLUSTER 2 asd Zasd ECs4278 YPO3949 STM3539 BU448 VC2036 PA3117 HI0646 PM1632 NMB2079 NMA0351 RSc1987 >COG0144 (Putative duplication confidence score 1.000) CLUSTER 1 AF0853 AF2039 AF2324 VNG0499G MJ0026 MK0043 MK0295 MK0370 MK0444 MK0673 MK0769 MK1539 MK1575 MK1630 PH0851 PH1078 PH1374 PH1537 PH1991 PAB0523 PAB0830 PAB1173 PAB1947 PAB2390 PAE0743 PAE3578 SSO0122 SSO0252 SSO0371 APE0514 APE1098 APE2465 YBL024w YNL022c YNL061w_2 SPAC17D4.04 SPAC23C4.17 SPAC2C4.06c SPBP8B7.20c ECU01g1080 ECU07g0320 ECU08g0400 TM1512 FN0313 DR2168 CAC1725 Cgl1561 Rv1407 MT1451 L141260 SPy1246_1 SPy1627 SP1402_1 SP1734 SA1060 lin1936 BS_yloM BH2507 slr0679 alr0820 alr1008 sun yebU_1 Zsun ZyebU_1 ECs2545_1 ECs4154 YPO0240 STM1850_1 STM3408 VC0044 VC1502_1 PA0017 HI0624 PM1561 XF0928 NMB0112 NMB1351 NMA0162 NMA1563 RSc0075 RSc2453 Cj0636 AGc495 AGc5121 SMc00403 SMc04090 BMEI0235 BMEII0890 mlr4098 mlr6944 CC0102 CC1619 CT553 CPn0674 CLUSTER 2 MK0170 >COG0145 (Putative duplication confidence score 0.667) CLUSTER 1 AF0906 MA0858 MA2889 MA3497 MA3498 MA4203 MA4395 MA4396 MA4562 MA4563 MK1093 SSO1668 lin0475 BH1881 BH1884 AGl3521 AGl3530 SMc02580 mll9131 mlr4662 CLUSTER 2 MA2300_1 MJ0964 MK1091 TVN0812 PAE2030 SSO1663 SSO2008 SSO2936 APE1328 APE2528 YKL215c_1 SPAC11D3.14c_1 SPAC11D3.15_1 aq_708 Rv0266c_1 slr0697_1 all4970 HP0695 jhp0633 AGpT62 SMb20023_1 SMb20406 BMEII0602_1 mlr1573_1 mlr4786 mlr5245 mlr7024 mlr9030 CC2369_1 >COG0146 (Putative duplication confidence score 0.500) CLUSTER 1 MA2300_2 MJ0963 MK1048 TVN0811 PAE2028 SSO1662 SSO2010 SSO2934 APE1331 APE2530 YKL215c_2 SPAC11D3.14c_2 SPAC11D3.15_2 aq_1925 Rv0266c_2 slr0697_2 all4969 AGpT63 SMb20023_2 BMEII0602_2 mlr1573_2 mlr4788 mlr7025 mlr9031 CC2369_2 CLUSTER 2 HP0696 jhp0632 SMb20407 mlr5246 >COG0147 (Putative duplication confidence score 1.000) CLUSTER 1 AF1603 VNG0384G VNG1647G MA2987 MTH1655 MJ1075 MK0437 Ta0806m TVN1024 PAB2045 PAE2460 SSO0893 APE2553 YER090w YNR033w_2 SPBP8B7.29_2 SPCC1442.09 aq_1144 aq_582 TM0142 FN1730 DR0196_1 DR1791 CAC3163 Cgl0970_2 Cgl2971 Rv1005c Rv1609 Rv2386c MT1034 MT1644 MT2454 ML0236 ML1269 L0054 L0179_1 SPy1990_1 SP0665_1 SP1817 SA0669 SA1199 lin1674 lin2893_1 BS_pabB BS_trpE BH0090 BH1659 slr0738 slr1979 all0328 all0414_1 alr3233_1 alr3443_2 pabB trpE ZpabB ZtrpEm ECs1836 ECs2521 YPO1773 YPO1916 YPO1976 YPO2208 STM1723 STM1824 BUpT01 VC1174 VC1303 PA0609 PA1001 PA1758 HI1170 HI1387 PM0584 PM1464 XF0210 XF0674 XF1914 NMB1021 NMB1970_1 NMA0477_1 NMA1247 RSc2633_1 RSc2881 HP0293_1 HP1282 jhp0278_1 jhp1203 Cj0345 Cj0862c_1 AGc3082 AGc4162_1 SMc02725_1 SMc04013 BMEI0449_1 BMEII0013 mlr2774_1 mlr3005 CC1895 CC2953 CLUSTER 2 PA1903_1 PA4214_1 >COG0157 (Putative duplication confidence score 0.500) CLUSTER 1 AF1839 VNG1884G MA0322 MA0955 MTH1832 MJ0493 MK0446 PH0011 PAB2347 PAE3114_1 SSO0996 YFR047c aq_869 TM1645 FN0010 CAC1023 Cgl1044 Rv1596 MT1632 ML1227 SPy0197 SP2016 lin2132 BS_nadC BH1219 slr0936 all2091 nadC ZnadC ECs0113 YPO3424 STM0145 VC2422 PA4524 XF1925 NMB0396 NMA2088 RSc2448 HP1355 jhp1273 AGl1516 SMc02598 mll5833 mll6272 mll9102 CC2915 CLUSTER 2 ZmodD ECs1694 HI1473 PM1111 >COG0160 (Putative duplication confidence score 0.750) CLUSTER 1 VNG1524C VNG6210G MA2859 Ta0068 TVN0024 PH0138 PH0782 PH1423 PH1501 PAB0086 PAB0501 PAB1921 PAB2386 PAE1799 SSO2720 SSO2727 SSO3211 APE0457 SPAC1039.07c DRA0029 CAC0368 CAC1427 Cgl0472 Cgl2387 Rv2589 MT2666 ML0485 SA2397 BS_ycnG BH0919 BH0991 BH2624 all0396 alr2398 gabT goaG ZgabT ZgoaG ECs1879 ECs3523 YPO2844 STM2792 VCA0605 VCA0824 PA0266 PA2413 HI0949 RSc0029 RSp1424 AGpA358 AGpA435 SMa1761 SMa2400 SMb20973_3 SMb21186 SMc00675_2 SMc00677_3 SMc02413 BMEII0131 BMEII0348 mlr5521 mlr5943 mlr6024 mlr6991 mlr7169 CLUSTER 2 YGR019w SPAC19D5.07 Rv3290c MT3389 >COG0169 (Putative duplication confidence score 1.000) CLUSTER 1 AF2327 VNG0382G MA4594 MTH242 MJ1084 MK0117 Ta0284 TVN1317 PAB0300 PAE1913 SSO0306 APE0574 YDR127w_5 SPAC1834.02_5 aq_901 TM0346 FN0045 DR0077 DR1173 CAC0897_2 Cgl0419 Cgl1108 Cgl1591 Rv2552c MT2629 ML0515 L0061 SPy0534 SPy1584 SP1376 SA1424 lin0493 lin1525 lin2338 BS_aroD BH1324 slr1559 alr2057 aroE ydiB ZaroE ZydiB ECs2399 ECs4147 YPO0246 YPO1610 STM1359 STM3401 STM3859 BU493 VC0056 PA0025 PA0244 HI0607 HI0655 PM1271 PM1429 XF0624 NMB0358 NMA2129 RSc2777 RSp1398 HP1249 jhp1170 Cj0405 AGc3 AGl1139 AGl673 SMb20037 SMc02791 BMEI2058 BMEII0059 BMEII0871 mlr4492 CC0003 CT370_2 CPn1035_2 CLUSTER 2 SMc02044 >COG0174 (Putative duplication confidence score 0.600) CLUSTER 1 AF0949 VNG2093G MA3382 MA4216 MTH1570 MJ1346 MK0338 Ta1498 TVN1492 PH0359 PAB1292 PAE2556 PAE3442 SSO0366 SSO2440 SSO2554 APE2142 aq_111 TM0943 DR0451 Cgl2165 Cgl2180 Rv1878 Rv2220 Rv2222c Rv2860c MT1927 MT2278 MT2280 MT2928 ML0925 ML1631 L0118 SPy1877 SP0502 SA1150 lin1337 BS_glnA BH2360 BH3867 slr1756 alr2328 glnA ycjK Z2491 ZglnA ECs1874 ECs4792 YPO0024 STM4007 VC2746 PA0296 PA0298 PA1566 PA2040 PA3356 PA5119 PA5508 PA5522 HI0865 PM1175 XF1842 NMB0359 NMA2128 RSc1258 RSp0886 HP0512 jhp0461 Cj0699c AGc1068 AGc3253 AGc326 AGc3883 AGl1262 SMc00762 SMc00948 SMc01594 SMc01973 SMc02352 SMc02613 BMEI0979 BMEII0523 BMEII0554 mll0343 mll3074 mll4187 mll5148 mll6521 mll7254 mll7307 mlr6210 CC1969 CC3130 CC3138 RP495 RC0671 CLUSTER 2 YPR035w SPAC23H4.06 AGc4385 SMb20745 mlr0339 >COG0179 (Putative duplication confidence score 1.000) CLUSTER 1 AF0091 AF2225 VNG1037G MA0585 MTH1507 MJ1656 MK1002 Ta0750 Ta1154m TVN1232 PH0643 PAB1451 PAE2688 SSO2520 SSO2773 SSO2941 APE0053 YNL168c SPBC21C3.09c DR1609 DRA0226 Cgl1260 Cgl2964 Rv0939_1 Rv2993c MT0966_1 MT3071 ML1689 SA0829 lin2367 BS_yisK BH1071 BH2000 BH2005 slr1877 alr4803 ycgM Z1942 Z3392 ECs1675 ECs3029 YPO1566 YPO2082 STM0331 STM1101 STM1812 STM2177 VCA1004 PA0318 PA2008 PA2471 PA4121 PA4122 PM1528 PM1529 NMB1338 NMA1552 RSc0383 RSc1086 RSc1824 RSp0690 Cj0021c AGc22 AGc2795 AGl564 SMb21112 SMc04240 BMEI1708 BMEI1882 BMEII0137 mll4780 mlr1134 CC3567 CLUSTER 2 VC1346 RSc0301 SMc03207 mlr8306 CC2531 >COG0183 (Putative duplication confidence score 0.700) CLUSTER 1 AF0018 AF0034 AF0133 AF0134 AF0201 AF0202 AF0283 AF0438 AF0967 AF0968 AF1291 AF2416 VNG0678G VNG0931G MA4042 MTH793 MJ1549 MK1378 Ta0030 Ta0351 Ta1456 TVN0069 TVN0131 TVN1260 PH0676 PAB0907 PAE1377 PAE2183 PAE2471 PAE2486 PAE2488 SSO0534 SSO2061 SSO2062 SSO2508 SSO2625 SSO2697 SSO2874 SSO3113 APE0929 APE1872 APE2382 APE2384 Rv0914c Rv1627c Rv1867 Rv2790c Rv3522 Rv3523 Rv3540c MT0939 MT1663 MT2860 MT3622.1 MT3623 MT3644 PA1016 AGl121 SMc00262 mlr7614 CC1432 CC1967 CC3111 CLUSTER 2 AF1028 AF1197 AF2243 VNG2063G Ta0296 Ta0582 TVN0649 TVN1304 PAE1220 PAE3656 SSO2377 SSO2496 APE2108 YIL160c YPL028w SPBC215.09c ECU06g0940 FN0495 DR1072 DR1428 DR1960 DR2480 DRA0053 CAC2873 CAP0078 Cgl2341 Rv0243 Rv0859 Rv1074c Rv1323 Rv3546 Rv3556c MT0257 MT0882 MT1104 MT1169 MT1365 MT3650 MT3660 ML1158 ML2162 ML2564 L11745 L25946 SPy0140 SPy0524 SPy1637 SA0223 SA0342 SA0534 lin1453 BS_mmgA BS_yhfS BS_yusK BH0205 BH1997 BH2029 BH3487 BH3801 slr1993 atoB fadA paaJ yfcY yqeF Z3605 ZfadA ZyqeF ECs3225 ECs3701 ECs4773 YPO2746 YPO3767 STM2389 STM3019 STM3982 VC1046 VC2759 VCA0690 PA0228 PA1736 PA2001 PA2553 PA2940 PA3013 PA3454 PA3589 PA3925 PA4785 HI0771 RSc0276 RSc0475 RSc1632 RSc1637 RSc1761 RSc2252 HP0690 jhp0638 AGc5022 AGc886 AGl2713 AGl640 SMa1450 SMb20589 SMc00966 SMc02228 SMc03879 BMEI0274 BMEII0496 BMEII0646 BMEII0817 mll4180 mlr3847 mlr5628 CC0077 CC0265 CC0510 CC0779 CC0894 CC1111 CC2407 CC3462 RP737 RC1134 RC1135 BB0109 >COG0194 (Putative duplication confidence score 1.000) CLUSTER 1 YDR454c SPBC1198.05 ECU01g1220 aq_184 TM1689 FN2033 DR2289 CAC1718 Cgl1568 Rv1389 MT1434 ML0541 L149828 SPy1632 SP1738 SA1052 lin1941 BS_yloD BH2512 slr1123 alr0106 gmk Zgmk ECs4523 YPO0040 STM3740 BU434 VC2708 PA5336 HI1743 PM0922 XF1503 NMB1661 NMA1919 RSc2155 HP0321 jhp0304 Cj1177c AGc2038 SMc00577 BMEI1469 mlr7857 CC1681 RP765 RC1194 CT030 CPn0120 UU213 MYPU_6870 MPN246 MG107 CLUSTER 2 CAC0298 CAC1217 >COG0195 (Putative duplication confidence score 1.000) CLUSTER 1 AF1891 VNG2661G MA1260 MTH1054 MJ1045 MK0682 Ta0393m TVN1179 PH1543 PHS019 PAB0426 PAB3393 PAE0669 SSO0220 APE1850 aq_259 TM1777 FN2022 DR1797 CAC1799 Cgl1941 Rv2841c MT2907 ML1558 L173813 SPy1724 SP0553 SA1109 lin1359 BS_nusA BH2416 slr0743 alr3829 nusA ZnusA ECs4050 YPO3497 STM3287 BU378 VC0642 PA4745 HI1283 PM0760 XF0234 NMB1642 NMA1896 RSc1288 HP1514 jhp1407 Cj0460 AGc136 SMc02912 BMEI1967 mlr5551 CC0044 RP553 RC0817 CT097 CPn0316 TP0892 BB0800 UU318 MYPU_2030 MPN154 MG141 CLUSTER 2 MTH1217 MK0714 PH0706 PAB1492 PAE0705 SSO0172 >COG0196 (Putative duplication confidence score 1.000) CLUSTER 1 YDR236c SPCC18.16c aq_139 TM0857 FN0707 DR1008 CAC1806 Cgl1932 Rv2786c MT2856 ML0852 L0167 SPy1250 SP1110 SA1115 lin0735 lin1366 BS_ribC BH2409 slr1882 alr4848 ribF ZribF ECs0028 YPO0474 STM0045 BU150 VC0681 PA4561 HI0963 PM1661 XF2419 NMB1834 NMA0621 RSc2457 HP1087 jhp0338 Cj0589 AGc1228 SMc00909 BMEII1044 mlr8243 CC0703 CT093 CPn0320 TP0888 UU355 MYPU_5480 MPN158 MG145 CLUSTER 2 BS_ribR >COG0208 (Putative duplication confidence score 0.667) CLUSTER 1 VNG2383G YGR180c YJL026w SPBC25D12.04 ECU06g0730 aq_1505_1 aq_1505_3 FN0103 DRB0109 CAC3276 Cgl2473 Rv1981c Rv3048c MT2033 MT3133 ML1731 L0295 SPy0425 SPy1378 SP1180 SA0687 lin2258 BS_nrdF BS_yosP BH0502 slr0591 nrdB nrdF ZnrdB ZnrdF ECs3118 ECs3539 YPO1213 YPO2648 STM2278 STM2808 BU178 VC1255 PA1155 HI1660 PM0719 XF1197 NMB1288 NMA1498 RSc2804 HP0364 jhp1016 Cj0231c AGc107 BMEII0929 CC0260 RP512 RC0651 CT828 CPn0985 TP0053 MYPU_5390 MPN322 MG229 CLUSTER 2 SSO2498 Rv0233 MT0244 >COG0209 (Putative duplication confidence score 1.000) CLUSTER 1 AF1664 VNG1644G VNG2384G MA1665 MTH652 Ta1475 TVN0092 PH0363_1 PH0363_3 PAB1057_1 PAB1057_3 PAB1057_5 PAB1057_7 PAE3155 SSO0929 APE2062 YER070w YIL066c SPAC1F7.05 ECU10g0920 aq_094 TM0118 FN0102 DR2374_3 DRB0108 CAC1047 CAC3277 Cgl2478 Rv0570 Rv3051c MT0596 MT3137 ML1734 L0294 SPy0427 SPy1375 SP1179 SA0686 lin2259 BS_nrdE BS_yosN BS_yosO_1 BS_yosO_3 BH0501 BH2810 slr1164 nrdA nrdE ZnrdA ZnrdE ECs3117 ECs3538 YPO1214 YPO2649 STM2277 STM2807 BU179 VC1256 PA1156 PA5496 PA5497 HI1659 PM0717 XF1196 NMB1291 NMA1501 RSc0195 RSc2805 HP0680 jhp0621 Cj0024 AGc106 AGc3183 SMc01237 BMEI0943 BMEII0930 mll0136 CC1889 CC3492 RP513 RC0647 CT827 CPn0984 TP1008 MYPU_5410 MPN324 MG231 CLUSTER 2 DR2374_1 >COG0219 (Putative duplication confidence score 1.000) CLUSTER 1 FN0809 DR0231 CAC0700 Cgl0628 Rv3366 MT3475 ML0419 L161988 SPy0371 SP0486 SA1672 BS_cspR BH1023 slr0992 alr3352 yibK ZyibK ECs4484 YPO0071 STM3695 VC2695 PA5127 HI0766 PM1513 XF1972 NMB0268 NMA2218 RSc0358 Cj0904c AGc4082 SMc00184 BMEI0470 mlr2718 CC0471 CT540 CPn0660 UU268 MYPU_3030 MPN521 MG346 CLUSTER 2 VCA0627 >COG0222 (Putative duplication confidence score 1.000) CLUSTER 1 YGL068w SPCC4B3.09c aq_1937 TM0457 FN2037 DR2043 CAC3145 Cgl0479 Rv0652 MT0681 ML1895 L0405 SPy1073 SP1354 SA0498 lin0283 BS_rplL BH0122 sll1746 alr5303 rplL ZrplL ECs4909 YPO3748 STM4152 BU035 VC0327 PA4271 HI0641 PM1738 XF2634 NMB0131 NMA0143 RSc3035 HP1199 jhp1122 Cj0477 AGc3571 SMc01318 BMEI0748 mlr0275 CC0497 RP139 RC0180 CT316 CPn0080 TP0240 BB0390 UU011 MYPU_2890 MPN539 MG362 CLUSTER 2 CAC1661 Cgl0420 ssl0438 >COG0223 (Putative duplication confidence score 1.000) CLUSTER 1 YBL013w SPAC1805.09c aq_1156_1 aq_2131 TM0528 FN1489 DR2435 CAC1723 Cgl1562 Rv1406 MT1450 ML0552 L0362 SPy1628 SP1735 SA1059 lin1937 BS_fmt BH2508 slr0070 alr3460 fmt yfbG_1 Z3513_1 Zfmt ECs3143_1 ECs4153 YPO0241 YPO2420_1 STM2299_1 STM3407 BU497 VC0045 PA0018 PA3554_1 HI0623 PM1560 XF0927 NMB0111 NMA0163 RSc0072 RSc1320 HP1141 jhp1069 Cj0098 AGc642 SMb21235 SMc01100 BMEI1418 BMEII0265 mll4854 CC0279 RP209 RC0279 CT530 CPn0649 TP0756 BB0064 UU463 MYPU_0450 MPN543 MG365 CLUSTER 2 Rv3404c MT3512 >COG0224 (Putative duplication confidence score 1.000) CLUSTER 1 MA2433 YBR039w SPBC1734.13 aq_2041 TM1611 FN0359 CAC2866 Cgl1184 Rv1309 MT1349 ML1144 L8105 SPy0759 SP1509 SA1906 lin0137 lin2674 BS_atpG BH3755 sll1327 all0004 atpG ZatpG ECs4675 YPO4122 STM3866 BU007 VC2765 PA5555 HI0480 PM1493 XF1144 NMB1935 NMA0518 RSc3318 HP1133 jhp1061 Cj0106 AGc4756 SMc02500 BMEI0250 mll4063 CC3448 RP802 RC1236 UU130 MYPU_2670 MPN599 MG400 CLUSTER 2 aq_203 >COG0226 (Putative duplication confidence score 1.000) CLUSTER 1 AF1356 VNG0457G VNG2486G MA0887 MA2349 MA3093 MTH1727 MTH1728 MJ1015 MK1690 PAB2365 PAE1397 SSO0489 APE0045 aq_2016 TM1264 DRA0157 CAC1705 Cgl2521 Rv0928 Rv0932c Rv0934 MT0955 MT0959 MT0961 ML2095 ML2192 L158188 L159386 SPy1245 SP1400 SA1221 lin2642 BS_pstS BH2994 sll0540 sll0679 sll0680 slr1247 all0911 all3054_1 all4575 alr1094 alr4585 pstS Z4788 Z4789 ZpstS ECs4271 ECs4272 ECs4664 YPO3203 YPO4117 STM3528 STM3857 VC0721 VCA0070 VCA0807 PA0688 PA0689 PA2548_1 PA5369 HI1383m PM0436 XF2141 RSc1529 RSc3310 Cj0613 AGc738 SMc02146 BMEI1989 mll3723 CC1515 BB0215 UU198 MPN611 MG412 CLUSTER 2 SP2084 >COG0235 (Putative duplication confidence score 1.000) CLUSTER 1 AF0480 VNG1201G MA0263 MTH1406 MJ1418 MK1585 TVN1450 PH0191 PAB0117 PAE2158 APE1657 YJR024c SPAC20H4.05c SPAC9.06c SPBC1289.14 SPBC359.06 aq_1658 aq_1979 TM0283 TM1072 FN1417 CAC1341 Rv0727c MT0752 ML0837 SPy0179 SP2033 SP2166 lin2198 lin2979 BS_araD BS_ykrY BH1871 all1723 araD fucA rhaD sgaE sgbE ygbL ZaraD ZfucA ZrhaD ZsgaE ECs0065 ECs3660 ECs4829 ECs5174 YPO0328 YPO1236 YPO2230 YPO3326 STM0101 STM2916 STM2974 STM3677 STM4045 STM4388 VCA0244 PA0224 PA1683 PA3430 HI0611 HI1012 HI1025 PM1244 PM1364 XF2209 RSc0806 RSc1767 RSp0889 HP0112 jhp0104 SMa1976 SMb20490 SMb20666 SMc01621 BMEII0189 BMEII1095 mll4933 mlr6791 CC1201 RP493 RC0678 MYPU_5990 MPN498 CLUSTER 2 BH1952 >COG0243 (Putative duplication confidence score 1.000) CLUSTER 1 AF0159 AF0176 AF1203 AF1651 AF2384 VNG0829G MTH1140 MTH1567 MJ0006 MJ1353m MK0321 Ta0045m TVN0002 PH1353 PH1359 PAB0532 PAB1389 PAB2442 PAE1265 PAE2002 PAE2662 PAE2840 PAE2859 SSO1029 SSO1580 SSO2795 SSO3191 APE2556 APE2610 aq_1039 aq_1234 aq_217 DR0397 Cgl0516 Rv0197 Rv1442 Rv2900c MT0207 MT1487 MT2968 BS_nasC BS_yoaE BS_yyaE BH0615 BH2530 BH2853 sll1454 all1061 alr0612 bisC bisZ dmsA fdhF fdnG fdoG napA torA ydeP ynfE ynfF Z2207 Z2575 Z2576 Z3785 ZbisC ZbisZ ZdmsA ZfdhF ZfdnG ZfdoG ZnapA ZtorA ECs0979 ECs1152 ECs2078 ECs2106 ECs2293 ECs2294 ECs2582 ECs3095 ECs3384 ECs4436 ECs4820 ECs5061 YPO0344 YPO0794 YPO2965 YPO3038 YPO3325 STM0611 STM0964 STM1383 STM1498 STM1499 STM1570 STM2065 STM2259 STM2530 STM3644 STM3822 STM4037 STM4285 STM4305 VC1692 VC1950 VCA0678 PA1174 PA1779_1 PA2714 PA3534 PA5181 HI0006m HI0344 HI0643 HI1047 PM0408 PM0409 PM0721 PM1594 PM1754 PM1793 RSc2373 RSc2859 RSp0070 RSp1048 RSp1219 HP0407 jhp0974 Cj0264c Cj0780 Cj1511c AGc2104 AGc2854 AGl1895 AGl213 AGl917 SMa0002 SMa1236 SMb20986 SMc00609 BMEI1243 BMEII0378 mll5614 mll9633 mlr2864 mlr7933 CC0617 CC1243 CLUSTER 2 PAE2839 >COG0246 (Putative duplication confidence score 0.562) CLUSTER 1 YEL070w YNR073c TM0068 CAC0695 Cgl0110 L0241 BS_yjmI BH0492 uxaB uxuB ydfI yeiQ ZuxaB ZuxuB ZydfI ZyeiQ ECs2128 ECs2151 ECs3064 ECs5282 YPO0580 YPO1280 YPO2325 STM1508 STM3083 STM3136 PA2342 RSc2129 AGc5101 AGl2604 AGl830 SMb20749 SMc01501 BMEII0478 mll4920 mlr1886 mlr4057 CC1487 CLUSTER 2 CAC0157 L33416 SP0397 SA1963 BS_mtlD BH3851 mtlD ZmtlD ECs4476 YPO4067 STM3686 BU571 VCA1046 PM1062 MYPU_7500 MPN652 >COG0247 (Putative duplication confidence score 1.000) CLUSTER 1 AF0502 AF0506 AF0543 AF0544 AF0547 AF0661 AF0755 AF0809 AF0867 AF1773 AF1851 AF1998 VNG1972G VNG2320G VNG2422G_2 VNG6379C_2 MA0526 MA0687 MA0688 MA4410_2 MA4630 MTH139 MTH1850_2 MJ0092_2 MK0132_2 MK0498 Ta0198m Ta0540 Ta0541 TVN0593 TVN0595 TVN1395 PAE1280 PAE1281 PAE1282 PAE1288 PAE1331 PAE1762 PAE2616 SSO2162_2 SSO2398 SSO2643 SSO3131 SSO3161 APE0101 APE0481 APE2352 aq_1639 aq_961 FN1540_2 DR1730 DR1907 DR2565 Cgl2262_2 Rv0338c MT0352 ML2501 L174321 BS_ysfD BS_yvfV BS_ywjF BH1832 BH2135 BH2729 BH3802 sll1831 all0623 glcF_2 glpC ydiJ_2 ykgE ZglpC ZydiJ_2 ZykgE ECs0344 ECs2394_2 ECs3128 YPO2407_2 YPO3824 STM1365_2 STM2286 VC1198_2 VCA0749 VCA0985_2 PA4772_2 PA5353 PA5399 HI0683 HI1163_2 PM0787_2 PM1440 PM1853 NMB0998_2 NMB1436 NMA1206_2 NMA1648 RSc0454_2 RSc1611 RSc2668 RSp0059 HP0139 HP0666 HP1222_2 jhp0127 jhp0611 jhp1143_2 Cj0075c Cj0991c Cj1585c_2 AGc1194 SMc00926 BMEII1061 mlr5745 mlr6920 CLUSTER 2 SSO0018 >COG0249 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0163G VNG0172G MA0523 TVN0674 TVN0675 YCR092c YDL154w YDR097c YFL003c YHR120w YOL090w SPAC13f5.01c SPAC8F11.03 SPBC19G7.01c SPCC285.16c ECU03g0540 ECU10g0710 aq_308 TM1719 FN0693 DR1039 CAC1837 CAC3034 CAC3563 L0277 SPy2148 SA1137 SA1853 lin1440 BS_mutS BH2369 sll1165 alr3638 mutS ZmutS ECs3589 YPO3354 STM2909 BU429 VC0535 PA3620 HI0707 PM1830 XF1716 NMB2160 NMA0247 RSc1151 AGc602 SMc01125 BMEI1801 mll5328 CC0012 RP298 RC0401 CT792 CPn0941 TP0328 BB0797 CLUSTER 2 SPBC24C6.12c >COG0252 (Putative duplication confidence score 1.000) CLUSTER 1 AF0882 VNG1844G MA1317 MTH706 MJ0020 MK1509 Ta0972 TVN1118 PH0066 PH1463 PAB1901 PAB2294 PAE1003 SSO0938 APE2200 YDR321w YLR155c YLR157c YLR158c YLR160c SPAC186.03 SPAC977.12 FN0751 DR2353 CAC1714 Cgl2092 Rv1538c MT1590 ML1198 L142722 SPy1782 SP1998 SA1310 lin2054 BS_ansA BS_yccC BH1624 ansA ansB ZansA ZansB ECs2474 ECs3833 YPO1386 YPO2161 STM1294 STM3106 STM3598 VC1995 PA1337 PA2253 HI0745 XF1093 NMB1688 NMA1947 RSc1306 HP0723 jhp0661 Cj0029 AGl2084 BMEI0105 BMEI0107 CLUSTER 2 YHR139c YNL160w >COG0259 (Putative duplication confidence score 1.000) CLUSTER 1 YBR035c SPAC1093.02 DR0495 Rv2607 MT2682 ML2131 sll1440 all1248 pdxH ZpdxH ECs2347 YPO2370 STM1448 VCA1079 PA1049 HI0863 XF1337 NMB1360 NMA1572 RSc0767 RSp0678 AGc1381 SMc00069 BMEI1517 mll7454 CC0918 CLUSTER 2 PA1905 PA4216 >COG0262 (Putative duplication confidence score 0.909) CLUSTER 1 MA4540 DR0793 CAC1495 Cgl0700 L18647 lin2717 BS_ywjB BS_yyaP PA3469 AGc2241 AGl575 SMa1326 SMc02439 SMc04173 mll1872 mll8258 mll8388 mlr0926 mlr2503 mlr2644 CLUSTER 2 YOR236w SPCC1223.08c_2 ECU01g0170 ECU01g1450 ECU08g0080 TM1641 FN0241 DR2632 CAC3004 Cgl0820 Rv2763c MT2833 ML1518 L162872 SPy0883 SP1571 SA1259 lin1987 BS_dfrA BH3450 folA Z0055 ECs0051 YPO0486 STM0087 BU143 VC0440 PA0350 HI0899 PM1893 XF2331 NMB0308 NMA2179 RSc0946 AGc3708 SMc01442 BMEI0609 mll1457 CC2126 RC0034 CT612 CPn0759 UU114 MYPU_5370 MPN300_1 MPN321 MG213_1 MG228 >COG0266 (Putative duplication confidence score 1.000) CLUSTER 1 DR0493 Cgl2021 Rv0944 Rv2924c MT0970 MT2994 ML1658 L0271 SPy0497 SP0970 SA1512 lin1599 BS_mutM BH3152 slr1689 alr4320 mutM ZmutM ECs4510 YPO0052 STM3726 VC0221 PA0357 HI0946 PM1145 XF0071 XF0170 NMB1295 NMA1505 RSc0399 AGc561 SMc01154 BMEI1946 mll5585 CC3707 RC1038 UU413 MYPU_3100 MPN380 MG262.1 CLUSTER 2 Cgl0824 Cgl2944 Rv2464c Rv3297 MT2539 MT3396 nei Znei ECs0739 STM0728 >COG0272 (Putative duplication confidence score 1.000) CLUSTER 1 aq_633 TM0100 FN1717 DR2069 CAC1195 CAC2673 Cgl1215 Rv3014c MT3094 ML1705 L0304 SPy0751 SP1117 SA1720 lin1870 BS_yerG BH0649 sll1209 all1717 lig Zlig ECs3283 YPO2989 STM2427 BU067 VC0971 PA1529 HI1100 PM1716 XF2556 NMB0666 NMA0865 RSc1398 HP0615 jhp0558 Cj0586 AGc3775 SMc01878 BMEI0589 mll1539 CC1522 RP720 RC1096 CT146 CPn0149 TP0634 BB0552 UU121 MYPU_3890 MYPU_4010 MPN357 MG254 CLUSTER 2 yicF ZyicF ECs4522 YPO0041 STM3739 >COG0276 (Putative duplication confidence score 1.000) CLUSTER 1 Ta0311 TVN1293 YOR176w SPCC320.09 aq_948 DR1131 Cgl1500 Rv1485 MT1532 ML1805 L0194 SP1009 SA1651 lin2314 BS_hemH BH1203 slr0839_1 alr3751 hemH ZhemH ECs0528 YPO3117 STM0489 VC0987 PA4655 HI1160 PM0789 XF0566 NMB0718 NMA0927 RSc2643 HP0376 jhp1005 Cj0503c AGl2129 SMc04019 BMEII0018 mlr3019 CC3762 RP884 RC1373 CT485 CPn0603 CLUSTER 2 alr4616 >COG0277 (Putative duplication confidence score 1.000) CLUSTER 1 AF0394 AF0507 AF0808 AF0868 VNG2422G_1 MA4410_1 MA4631 Ta0542 TVN0596 PAE1284 PAE1286 PAE2035 SSO0788 SSO1004 SSO1063 SSO1531 SSO2162_1 SSO3163 SSO3165 APE0308 APE0487 YDL174c YDL178w YEL071w YML086c SPAPB1A10.12c SPBC713.03 aq_1769 FN1536 DR1026 DR1731 DR1732 CAC2542 Cgl0191 Cgl0556 Cgl0877 Cgl2262_1 Rv0063 Rv0161 Rv1257c Rv1726 Rv1771 Rv1774 Rv2251 Rv2280 Rv3107c Rv3351c Rv3352c Rv3353c Rv3719 Rv3790 MT0068 MT1296 MT1767 MT1821 MT1824 MT2311 MT2338 MT3190 MT3459 MT3460 MT3461 MT3822 MT3898 ML0109 ML1103 ML2333 ML2631 BS_ygaK BS_yitY BS_ysfC BS_yvdP BH2134 BH2136 BH2730 sll0404 sll1189 slr0806 all0324 all0624 all4443 alr5269 dld glcD glcF_1 ydiJ_1 ygcT ygcU Z4084 Zdld ZydiJ_1 ECs2394_1 ECs3020 ECs3629 YPO0308_1 YPO1177 YPO2407_1 STM1365_1 STM2167 VC1198_1 VCA0985_1 PA0317 PA1416 PA3026 PA4140 PA4772_1 PA5327 PA5354 PA5355 HI1163_1 HI1649 PM0787_1 XF0347 XF2205 NMB0997 NMB0998_1 NMB1524 NMA1205 NMA1206_1 NMA1724 RSc0050 RSc0172 RSc0454_1 RSc1556 RSc2664 RSc2666 RSc2667 HP0509 HP1222_1 jhp0459 jhp1143_1 Cj1213c Cj1585c_1 AGc1189 AGc1191 AGc1314 AGc3718 AGc4965 SMa0244 SMb20097 SMb21129 SMb21415 SMc00779 SMc00832 SMc00833 SMc00985 SMc01020 SMc01455 SMc04384 BMEI0599 BMEI1527 BMEII0185 BMEII0438 BMEII1062 BMEII1063 BMEII1064 mll1265 mll1289 mll1488 mll2617 mll8576 mll8747 mlr6875 mlr6916 mlr6919 mlr7184 mlr7440 mlr8207 CC1219 CC3389 CLUSTER 2 YPO1451 >COG0280 (Putative duplication confidence score 0.833) CLUSTER 1 VNG1624G_2 MA3607 FN1172 DR0073_2 CAC1742 Cgl2696 Rv0408_2 MT0421_2 L107797 SPy1128 SP1100 SA0545 lin2207 BS_pta BH3823 slr2132_2 eutI maeB_2 pta_2 Z3719_2 ZeutI Zpta_2 ECs3181_2 ECs3320 ECs3325_2 YPO2567_2 YPO3034_2 STM2338_2 STM2466 STM2472_2 BU176_2 VC1097_2 PA0835_2 HI1203_2 HI1245_2 PM0002_2 PM0705_2 XF0977_2 NMB0631_2 NMA0841_2 RSc2123_2 RSc2767_2 jhp0841_2 Cj0688_2 AGc3042_2 AGl2933_2 SMb21532 SMc00169_2 SMc01126_2 BMEI0967_2 BMEI1803 mlr0809_2 mlr5329_2 CC2622_2 CC3549_2 RP373_2 RC0507_2 TP0094 BB0589 UU066 MYPU_2370 MPN428 MG299 CLUSTER 2 TM1130 TM1755 CAC3076 lin1406 BS_yqiS RP109 RC0147 >COG0281 (Putative duplication confidence score 0.588) CLUSTER 1 AF1727 VNG1624G_1 MA1735 Ta0456m TVN0768 PH1275 PAB1792 PAE1688 SSO2869 APE0392 TM0542 Cgl2950 L3227 SPy1110 SA1524 BS_mleA BS_ytsJ BH0399 BH3168 slr0721 alr4596 maeB_1 Z3719_1 ECs3325_1 YPO3034_1 STM2472_1 VC2681 PA5046 HI1245_1 PM0002_1 XF0977_1 NMB0671 NMA0870 RSc2123_1 RSc2767_1 Cj1287c AGc3042_1 AGl2933_1 SMc00169_1 SMc01126_1 BMEI0967_1 BMEI1802 mlr0809_1 mlr5329_1 CC2622_1 CC3549_1 RP373_1 RC0507_1 CLUSTER 2 MA1002 YKL029c SPAC750.08c SPCC794.12c DR2583 DRA0276 CAC1589 CAC1596 Rv2332 MT2394 L121483 lin2029 BS_malS BS_ywkA sfcA ZsfcA ECs2083 YPO1511 STM1566 VC1188 PA3471 >COG0285 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0412G_1 Ta0637 TVN0757 YKL132c YMR113w SPAC227.09 aq_2045 TM0166 FN1014 DR0340 DR2575 CAC2398 Cgl2324 Rv2447c MT2523 ML1471 L0177 SPy0814 SPy1096 SP0197 SP0290 SA1487 lin1586 BS_folC BH3037 sll1612 alr1026 folC ZfolC ECs3199 YPO2769 STM2365 BU167 VC1001 PA3111 HI1261 PM0635 XF1946 NMB0693 NMA0896 RSc1979 HP1545 jhp1454 Cj1088c AGc35 SMc02763 BMEI2021 mlr5076 CC3541 RP536 RC0779 TP0340 CLUSTER 2 YOR241w SPBC1709.17 >COG0296 (Putative duplication confidence score 0.833) CLUSTER 1 MA3032 SSO2093 DR0464 Cgl2075 Rv1562c MT1613 all0168 all0875 STM1560 PA2164 RSp0237 AGpA409 SMb21447 CLUSTER 2 YEL011w aq_722 FN0856 DR1848 Cgl1196 Rv1326c MT1368 SP1121 BS_glgB sll0158 all0713 glgB ZglgB ECs4277 YPO3942 STM3538 VCA0016 PA2153 HI1357 PM0541 RSp0239 AGl1558 SMc03922 mlr7587 CT866 CPn0475 >COG0303 (Putative duplication confidence score 1.000) CLUSTER 1 AF0161 AF0930 AF0931_1 VNG0086Gm_1 VNG0090G MA4087 MA4350_1 MTH1003 MTH1369 MJ0666 MJ0886_1 MK1524 Ta1022_1 Ta1023 TVN0566 TVN0567_1 PH0582 PH1647 PAB1436 PAB2014 PAE3048 PAE3465_1 PAE3466 SSO0676 SSO2365 APE0177 APE0450 aq_030 DR0076 CAC2020_1 CAC2021 Cgl0213 Cgl0858 Cgl1170 Rv0438c Rv0994 MT0454 MT1023 ML0183 SA2068 lin1034 BS_moeA BH3021 slr0900 all5136 moeA ZmoeA ECs0905 YPO1495 STM0846 VC1527_2 VCA0617 PA3028 PA3914 HI1448 PM0694 RSc1037 RSc1330 HP0172 jhp0158 Cj0857c Cj1519 AGc3105 SMc00238 BMEI0841 mlr0617 CC3209 CLUSTER 2 SMc00519_1 BMEI1902 mlr0093_1 >COG0305 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1472 TM1736 FN1827 DR0549 CAC3715 Cgl2923 Rv0058_1 Rv0058_3 MT0064_1 MT0064_3 ML2680 L0286 SPy2182 SP2203 SA0015 lin0047 BS_dnaC BH4029 slr0833_1 slr0833_3 all0578_1 all0578_3 all7274 dnaB ZdnaB ECs1190 ECs5034 YPO0320 YPO1869 STM4246 BU546 VC0371 PA4931 HI1574 PM0412 XF0361 NMB0494 NMB0885 NMA1105 RSc1311 HP1362 jhp1280 Cj0562 AGc2006 AGl882 SMc00561 SMc01749 BMEI1485 mll7836 CC1665 RP542 RC0803 CT497 CPn0616 TP0058 BB0111 BBG32 UU550 MYPU_5150 MPN232 MG094 CLUSTER 2 CAC1192 BS_yorI >COG0313 (Putative duplication confidence score 0.600) CLUSTER 1 aq_1111 TM0709 FN1204 DR0636 CAC0307 Cgl0866 Rv1003 MT1032 ML0193 L6615 SPy0406 SP0938 SA0447 lin0210 BS_yabC BH0049 sll0818 all4680 yraL ZyraL ECs4027 YPO3547 STM3263 BU091 VC0582 PA4422 HI1654 PM0645 XF0552 NMB2088 NMA0342 RSc3266 HP0552 jhp0499 Cj0154c AGc523 SMc00416 BMEI1770 mlr4632 CC0144 RP747 RC1158 TP0975 BB0427 UU195 MYPU_0540 MPN071 MG056 CLUSTER 2 NMB1908 NMA0547 RSc1045 CT048 CPn0382 >COG0316 (Putative duplication confidence score 1.000) CLUSTER 1 MA0903 YLL027w_2 YPR067w SPBC3B9.17 SPCC645.03c aq_1857 DR0051 DR0439 Cgl2149 Rv2204c MT2260 ML0871 SA0801 BS_yutM BH3410 slr1417 slr1565 all1431 all4341 alr2385 iscA yadR ydiC ZyadR ZydiC ZyfhF ECs0160 ECs2391 ECs3394 YPO2404 YPO2894 YPO3387 STM0204 STM1369 STM2541 BU122 BU211 VC0627 VC0750 PA0665 PA3812 HI0376 HI1723 PM0320 PM0458 XF0405 XF2394_2 XF2562 NMB0557 NMB1381 NMA0739 NMA1597 RSc0494 RSc1021 AGc3148 AGc3339 SMc00301 SMc02075 BMEI1034 BMEI1091 mll5942 mlr0024 mlr1094 CC1858 CC2009 RP063 RP484 RC0093 RC0728 CLUSTER 2 yhgI_1 ZyhgI_1 ECs4256_1 YPO0127_1 STM3511_1 BU544_1 VC2720_1 PA1847_1 HI0433_1 PM1557_1 XF2603_1 >COG0318 (Putative duplication confidence score 1.000) CLUSTER 1 AF0089 AF0196 AF0262 AF0567 AF0568 AF0672 AF0687 AF0840 AF1029 AF1261 AF1510 AF1772 AF1855 AF1932 AF2033 AF2368 VNG0162G VNG1073G VNG1339C MA1028 MA1422 MA3717 MTH657 Ta0292 Ta0667 Ta1450 TVN0126 TVN0671 TVN1309 PAE1379 PAE2333 PAE2466 SSO0369 SSO1597 SSO2510 SSO2523 SSO2808 SSO2875 SSO3064 APE0396 APE1310 APE2284 YBR041w YBR222c YOR093c SPAC22F3.04 SPAC56F8.02 SPCC1827.03c DR0336 DR1692 DR2507 DRA0264 DRA0309 Cgl0284 Cgl0395 Cgl0445 Cgl1172 Cgl2812 Rv0035 Rv0099 Rv0119 Rv0166 Rv0214 Rv0270 Rv0404 Rv0542c Rv0551c Rv1013 Rv1058 Rv1185c Rv1193 Rv1206 Rv1345 Rv1427c Rv1521 Rv1529 Rv1683_2 Rv1750c Rv1925 Rv2505c Rv2930 Rv2941 Rv2948c Rv2950c Rv3089 Rv3506 Rv3513c Rv3515c Rv3561 Rv3801c Rv3826 MT0040 MT0108 MT0127 MT0175 MT0224 MT0283 MT0417 MT0567 MT0577 MT1041 MT1088 MT1222 MT1230 MT1244 MT1387 MT1470 MT1572 MT1580 MT1723_2 MT1793 MT1976 MT2580 MT2999 MT3011 MT3021 MT3023 MT3174 MT3610 MT3615.2 MT3616 MT3666 MT3908 MT3934 ML0100 ML0132 ML0134 ML0138 ML0243 ML1051 ML1234 ML1346_2 ML1994 ML2257 ML2358 ML2546 ML2661 L0172 L24742 SPy0526 SA0226 SA0533 SA1615 lin1780 BS_lcfA BS_menE BS_pksJ BS_ydaB BS_yhfL BS_yhfT BS_yngI BH1131 BH1932 BH2006 BH3103 BH3104 slr0492 alr0035 alr2678_1 alr4057 aas_2 caiC fadD menE ydiD Zaas_2 ZcaiC ZfadD ZmenE ZydiD ECs0040 ECs2408 ECs2514 ECs3148 ECs3693_2 YPO0793_2 YPO2074 YPO2523 STM0071 STM1350 STM1818 STM2305 STM3010_2 VC0249 VC1971 VC1985 PA1215 PA2424_1 PA2557 PA2893 PA3299 PA3300 PA3860 PA3924 PA4198 HI0194 HI0390.1 PM0357 PM0707 XF0287 XF2276 NMB1276 NMB1555 NMA1482 NMA1743 RSc0064 RSc0442 RSc0780 RSc1749 RSc1806_1 RSc2857 RSp0227 RSp0641_1 RSp0787 RSp1419_1 Cj0938c_3 AGc2614 AGc3078 AGc713 AGl123 AGl2326 SMa0150 SMb20650 SMc00261 SMc00965 SMc02162 BMEI1632 mll5415 mll6742 mll6983 mll7824_2 mlr1843 mlr4763 mlr5451_3 mlr6932 mlr6974 mlr7293 mlr7537 CC0192 CC0391 CC0922_1 CC0944 CC0966 CC1165 CC1321 CC1733 CC1801 CC1812 CC2299 CC2400 CC3188 CC3338 RP620_3 RC0962_3 CT776 CPn0922 CLUSTER 2 SMc00592 >COG0322 (Putative duplication confidence score 1.000) CLUSTER 1 VNG2381G MA3324 MTH441 aq_2126 TM0265 FN1090 DR1354 CAC0508 CAC3468 Cgl1554 Rv1420 Rv2191_2 MT1463 MT2247_2 ML0562 L0258 SPy1068 SP0618 SA0993 lin0839 lin1197 BS_uvrC BS_yurQ BH3097 sll0664 sll0865 alr2728 uvrC ydjQ Z2771 ZuvrC ECs2447 ECs2651 YPO1866 STM1309 STM1946 VC1214 PA2585 HI0057 PM0857 XF2311 NMB1326 NMA1540 RSc1071 HP0821 jhp0760 Cj1246c AGc2088 SMc00602 BMEI1251 mlr7912 CC2881 RP572 RC0864 CT791 CPn0940 TP0472 BB0457 UU381 MYPU_1560 MPN125 MG206 CLUSTER 2 sll0441 >COG0323 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0159G MA0522 YMR167w YNL082w YPL164c SPAC19G12.02c SPBC1703.04 ECU05g0300 ECU11g1260 aq_1578 TM0022 FN0462 DR1696 CAC1836 L0276 SPy2121 SP0173 SA1138 lin1441 BS_mutL BH2368 slr1199 alr3055 mutL ZmutL ECs5146 YPO0371 STM4359 BU570 VC0345 PA4946 HI0067 PM0904 XF0760 NMB1442 NMA1655 RSc2563 AGc1260 SMc00932 BMEII1026 mll8278 CC0695 RP880 RC1361 CT575 CPn0812 TP0303 BB0211 CLUSTER 2 YLR035c >COG0324 (Putative duplication confidence score 1.000) CLUSTER 1 YOR274w SPAC343.15 aq_1067 TM0525 FN1917 DR1690 CAC1835 Cgl1899 Rv2727c MT2799 ML0995 L15012 SPy0921 SP0671 SA1144 lin1332 BS_miaA BH2366 sll0817 alr5266 miaA ZmiaA ECs5147 YPO0372 STM4360 BU569 VC0346 PA4945 HI0068 PM0905 XF0090 NMB0935 NMA1130 RSc2564 HP1415 jhp1310 Cj0166 AGc3695 SMc01435 BMEI0616 mll1448 CC2098 RP510 RC0656 CT766 CPn0910 TP0637 BB0821 CLUSTER 2 all0220 RSp1225 AGpT290 AGpT50 >COG0337 (Putative duplication confidence score 1.000) CLUSTER 1 Ta0285 TVN1316 PAB0298 PAE1926 SSO0305 APE0579 YDR127w_1 SPAC1834.02_1 TM0348_2 FN0871_1 DR0777 CAC0894 Cgl1583 Rv2538c MT2613 ML0518 L0060 SPy1577 SP1375 SA1298 lin2041 BS_aroB BH1657 slr2130 alr1924 aroB ZaroB ECs4231 YPO0152 STM3486 BU538 VC2628 PA5038 HI0208 PM1223 XF1334 NMB1814 NMA0647 RSc2969 HP0283 jhp0268 Cj1008c AGl2401 SMc00696 BMEI0043 mll3571 CC3009 CT369 CPn1036 CLUSTER 2 all0417 >COG0339 (Putative duplication confidence score 0.500) CLUSTER 1 YCL057w DR1659 Cgl2248 slr0659 alr0880 dcp prlC Zdcp ZprlC ECs2147 ECs4370 YPO3975 STM1512 STM3594 VC0188 PA0067 HI0214 PM0680 XF0127 XF1944 NMB0214 NMA0054 RSc1595 AGc4829 SMc04403 BMEII0416 mlr4139 CC3702 CLUSTER 2 YKL134c SPAC1F3.10c >COG0344 (Putative duplication confidence score 1.000) CLUSTER 1 aq_676 TM1447 FN0537 DR0790_1 DR2021 DR2270 CAC2500 L5517 SPy0908 SP0851 SA1187 lin1323 BS_yneS BH1639 sll1973 all0492 ygiH ZygiH ECs3942 YPO0647 STM3207 VC0523 PA0581 HI0266 PM1696 NMB1062 NMA1261 RSc2546 HP1509 jhp1402 Cj0357c AGc2402 SMc01362 BMEII0668 mlr0688 CC2446 UU405 MYPU_2950 MPN350 MG247 CLUSTER 2 TM1283 >COG0348 (Putative duplication confidence score 1.000) CLUSTER 1 AF0143 MA4409 MJ0749 MJ0750 MK1183 Ta1233 TVN0362_2 SSO1581_2 SSO1816 SSO2764_2 CAC2762_1 slr1529_3 all3558_3 napH yccM ZnapH ZyccM ECs1147 ECs3093 STM2257 VC0036 PA1551 PA3391_2 PA4131 HI0346 PM1596 NMB1454 NMA1668 RSc1280 RSp1369_2 HP1508 jhp1401 Cj0369c Cj0782 AGc2821 SMa1179_2 SMa1211 BMEI1567 BMEII0975_2 mll6626 mlr6415 CC1405 CLUSTER 2 BMEII0882 >COG0352 (Putative duplication confidence score 1.000) CLUSTER 1 AF2074 MA2722 Ta1277 TVN0508 PH1156 PAB1645 YPL214c_1 SPAC23H4.10c_1 aq_1366 aq_558 FN1752 FN1758 DRA0174 CAC0495 CAC2920 Cgl1428_1 Cgl1990 Rv0414c MT0427 ML0300 L0201 SP0718 SP0725 SA1894 lin0343 BS_tenI BS_thiC BH1431 sll0635 alr1343 thiE ZthiE ECs4916 YPO3740 STM4163 VC0062_2 PA3976 PA4400_2 HI0417 PM1260 XF0378 XF1120_2 NMB2069 NMA0363 RSc0108 RSp0984 HP0843 jhp0781 Cj1043c Cj1081c AGl3059 SMb20618 BMEI1736 mll5789 CC3264 CC3746 CLUSTER 2 AGl2166 SMc03996 BMEI0329 mlr3913 >COG0365 (Putative duplication confidence score 0.500) CLUSTER 1 AF0197 AF0366 AF0677 AF0975 AF0976 AF1287 AF2389-C AF2389-N VNG0484G VNG0997G MA2912 MTH1603 MTH1604 MTH216 MTH217 MTH701 MTH702 Ta0229 Ta0421 Ta0769 Ta1508m TVN0122 TVN1150 TVN1266 TVN1268 PAE2474 PAE2481 PAE2865 PAE2867 PAE3592 SSO1314 SSO1340 SSO1342 SSO1903 SSO2020 SSO2021 SSO2041 SSO2059 SSO2070 SSO2216 SSO2863 SSO3203 SSO9201 APE1346 APE2604m YAL054c YLR153c SPCC417.14c ECU05g0310 aq_2103 aq_2104 DR0460 DR2471 Rv3667 MT3768 SA1554 SA2402 lin2868 BS_acsA BS_ytcI BH1137 BH3201 BH3234 sll0542 all4256 all4257 acs prpE Z4856 Zacs ZprpE ECs0388 ECs4331 ECs5051 YPO0253 STM0371 STM4275 VC0298 VC1340 VCA0829 PA0887 PA0996 PA1997 PA2555 PA3568 PA4733 PM0692 XF1038 XF2255 RSc0432_1 RSc1518 RSc1952 RSp0037 RSp0367_1 RSp0651 RSp1265 HP1045 Cj1537c AGc4980 AGl1446 SMa0567 SMc00741 SMc00774 SMc04093 SMc04095 BMEI0238 BMEI0307 BMEI1921 BMEI1922 BMEII0815 mll5286 mll6017 mlr0619 mlr2005 mlr4089 mlr6539 CC3581 CLUSTER 2 L54546 lin0373 >COG0367 (Putative duplication confidence score 1.000) CLUSTER 1 AF1439 VNG0867G MA1966 MTH414 MJ1056 MJ1116 MK0103 Ta0315 TVN0439 PH1102 PAB0750 PAB1605 PAE0376 APE2041 YGR124w YML096w YPR145w SPBC119.10 SPBC4F6.11c ECU04g0840 CAC2243 CAC2249 Cgl2148 Rv2201 MT2257 ML0874 L00396 L0095 lin1772 BS_asnB BS_asnH BS_asnO BH1508 asnB ZasnB ECs0704 YPO2623 STM0680 VC0991 PA0051 PA1214 PA2084 PA3459 XF0118 SMb20481 SMb20652 mll5256 mll6743 mlr5888 mlr6755 mlr9125 CLUSTER 2 MA0051 >COG0370 (Putative duplication confidence score 1.000) CLUSTER 1 AF0246 AF2394 MA3477 MA4337 MTH1361 MTH213 MJ0566 MK1248 PH1205 PAB0708 PAE0323 PAE0324 aq_1255 TM0051 DR1219 CAC0448 CAC1031 L190009 SA2337 lin2209 slr1392 alr2118 alr2119 feoB ZfeoB ECs4251 YPO0132 STM3506 VC2077 PA4358 XF0933 RSp0251 HP0687 jhp0627 Cj1398 CC0712 CLUSTER 2 SA2369 >COG0372 (Putative duplication confidence score 0.500) CLUSTER 1 AF1340 VNG2102G MA0249 MTH1726 MTH962 Ta0169 Ta0819 TVN0239 PAE1689 PAE3584 PAE3585 SSO2589 APE1713 SPBC1703.07_2 aq_150 TM0290 DR0757 Cgl0639 Cgl0806 Cgl6076 Rv0889c Rv0896 Rv1131 MT0912 MT0920 MT1163 ML2130 L67186 SA1518 lin1602 BS_citA BS_citZ BS_mmgD BH3160 BH3924 sll0401 alr0222 gltA prpC ZgltA ZprpC ECs0386 ECs0745 YPO1108 STM0369 STM0730 VC1337 VC2092 PA0795 PA1580 PM0276 XF1535 NMB0431 NMB0954 NMA1148 NMA2054 RSc1991 RSp0121 HP0026 jhp0022 Cj1682c AGc2572 AGl71 AGpA439 AGpA441 SMc02087 BMEI0836 mll3842 mlr0629 mlr3843 msl6268 CC1906 CC3642 CC3643 RP844 RC1308 CLUSTER 2 YCR005c YNR001c YPR001w SPAC6C3.04 >COG0380 (Putative duplication confidence score 1.000) CLUSTER 1 MTH1757 Ta1210 TVN1254 PAE1272_1 YBR126c YDR074w_1 YML100w_2 YMR261c_2 SPAC19G12.15c_1 SPAC22F8.05_1 SPAC328.03 SPAC3G6.09c_1 SPACUNK4.16c_1 ECU01g0800 Cgl2573 Rv3490 MT3594 ML2254 sll1566 otsA ZotsA ECs2604 STM1928 RSp0731 RSp1105 SMa0233 mll0691 mlr9595 msr9761 CLUSTER 2 ECU01g0870_1 >COG0389 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1014G MA0974 MA4027 SSO2448 YDR419w YOR346w_2 SPBC16A3.11_1 SPCC553.07c FN1199 CAC0285 Cgl2094 Rv1537 Rv3056 MT1589 MT3142 L0305 L180104 SPy1846 SP0458 SA1196 SA1711 lin2082 lin2823 pli0067 BS_uvrX BS_yobH BS_yozK BS_yqjH BS_yqjW BH1472 BH2741 slr0790 alr7254 dinP umuC ZdinP ZumuC ECs0258 ECs1679 YPO3231 PSLT054 STM0313 STM1997 VC2287 PA0923 PM0467 NMB1448 NMA1661 RSc1587 AGc2382 AGpA692 SMa0886 SMa2355 SMc01373 BMEII0656 mll9709 mlr0866 mlr1877 CC2466 UU437 MYPU_1880 MPN537 MG360 CLUSTER 2 Cgl0600 Rv3394c MT3501 PA0670 RSp0799 AGl3171 AGpA144 AGpT174 SMa0890 SMc03789 BMEI1875 mlr4427 CC3212 >COG0396 (Putative duplication confidence score 0.600) CLUSTER 1 AF2364 VNG0524G MA4406 MTH1149 Ta0202 TVN1391 PH1384 PAB1855 PAE1808 SSO0925 APE1702 TM1368 DR2107 CAC3288 Cgl1525 Rv1463 MT1510 ML0595 L34806 SPy0285 SP0867 SA0774 lin2510 BS_yurY BH3471 slr0075 alr2493 ynhD ZynhD ECs2389 YPO2402 STM1371 XF1475 AGc3346 SMc00531 BMEI1041 mlr0019 CC1862 CT685 CPn0691 TP0611 CLUSTER 2 MA0937 MJ0035 MK1233 PH0882 TM1417 >COG0402 (Putative duplication confidence score 0.667) CLUSTER 1 AF0550 AF0997 AF1775 VNG1205C VNG2249G VNG6258C MA1276 MA4095 MTH1505 MTH994 MJ0699 MJ1541 MK0366 MK1050 Ta1060m TVN0515 PH1515 PAB0443 PAE0309 SSO0398 SSO0679 SSO2438 APE2436 YDL238c SPAC1F8.04c SPCC1672.03c aq_587 TM0936 DR0824 DRA0180 CAC0282 SP1356 BH0185 BH0746 BH1692 alr3749 ssnA ygfP Z4218 ZygfP ECs3752 ECs3756 YPO1974 PA0134 PA0142 PA1521 PA3170 PA5106 XF2472 RSc2099 RSc2119 RSp0551 HP0267 jhp0252 Cj0067 AGc4212 AGl1821 AGl363 AGl93GM SMa0551 SMb20288 SMb20849 SMb21293 SMc00673 SMc02414 SMc02416 SMc02421 BMEI1571 BMEII0369 mll8318 mlr5142 CC0961 CC2616 CLUSTER 2 SSO2770 Cgl0075 slr1237 codA yahJ ZcodA ZyahJ ECs0373 ECs0390 YPO0162 STM3334 PA0437 HI0842 PM0565 PM1882 RSc1594 AGl364 SMa2371 SMb20128 SMc02420 mll1290 mll2061 mlr5363 >COG0409 (Putative duplication confidence score 1.000) CLUSTER 1 AF1370 MA1139 MTH1072 MJ0993 MK0226 PH0879 PAB1559 aq_1157 CAC0811 slr1498 alr0696 hypD ZhypD ECs3585 STM2857 HP0898 jhp0835 Cj0625 CLUSTER 2 jhp0834 >COG0413 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1478G PH0951 PAB0570 PAE3410 SSO2400 APE0676 YBR176w SPAC5H10.09c aq_1973 TM1728 DR2615 CAC2914 Cgl0115 Rv2225 MT2284 ML1635 SA2392 lin2016 BS_panB BH1687 slr0526 all1522 panB ZpanB ECs0138 YPO3401 STM0182 BU197 VC0592 PA1598 PA4729 XF0229 NMB0870 NMA1088 RSc2630 HP1058 jhp0367 Cj0298c AGl2695 SMc01881 BMEI1592 mll0197 CC1651 CLUSTER 2 SMb20821 mll1731 mlr7631 >COG0417 (Putative duplication confidence score 1.000) CLUSTER 1 AF0497 AF0693m VNG0521G VNG6362G MA0885 MTH1208 MTH208 MJ0885_1 MJ0885_3 MJ0885_5 MK1039 Ta0450 Ta0907 TVN0660 TVN0823 TVN1045 PH1947_1 PH1947_3 PAB1128 PAE1113 PAE2109 PAE2180 SSO0081 SSO0552 SSO1459 APE0099 APE2098 APE2229 YDL102w YNL102w YPL167c SPAC3H5.06c SPAC688.10 SPBC336.04 ECU05g0990 ECU09g0430 alr7572 polB ZpolB ECs0064 YPO0518 STM0097 VC1212 PA1886 CLUSTER 2 YNL262w SPBC25H2.13c ECU10g1210 >COG0426 (Putative duplication confidence score 0.571) CLUSTER 1 AF0167 AF1520 MA1799 MA3381 MA3743 MTH1350 MTH157 MTH220 MJ0534 MJ0732 MJ0748 PH1085 PAB0596 TM0755 FN0512 FN1423 CAC1027 CAC2449 sll0217_1 sll0219_1 sll0550_1 sll1521_1 all0177_1 all0178_1 all3891_1 all3895_1 all4444_1 all4446_1 ygaK_1 Z4018_1 ECs3566_1 STM2840_1 CLUSTER 2 PH1971 PAB1188 aq_990 TM0013 CAC1498 PA4348 RSc2212 >COG0431 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1618H YLR011w SPCC4B3.06c DR0624 DR0962 Cgl0985 Cgl2851 Rv3054c MT3140 L171116 SPy1959 SP1471 SP1472_1 SP1546 SA0328 SA0518 lin2445 BS_yhdA BH2050 BH3321 slr0945 alr4777 ycbP yieF ZycbP ZyieF ECs1020 ECs4650 YPO3623 STM3850 VC2111 PA1204 PA2280 PA2357 PA3446 PM1472 NMB1796 NMA0666 RSc1337 RSp1495 AGc2746 AGpA462 AGpA786 SMb20573 SMc00183 SMc01960 SMc02650 mll2599 mll4710 mll4752 mll5191 mlr0414 mlr4323 mlr5227 CC1506 CC1536 MPN517 MG342 CLUSTER 2 Cgl1606 >COG0444 (Putative duplication confidence score 1.000) CLUSTER 1 AF1770 VNG2344G VNG2363Gm VNG2526G_1 MA0299 MA0698 MA0879 MA1245 MA1911 MA2479 MA3046 MA3457 MA3464 MA3908 MA4252 MA4598 Ta0265 Ta1325 TVN1329 PH0505 PH0810 PH1412 PH1959 PAB0094 PAB0630 PAB1196 PAB1346 PAB1874 PAE1297 PAE3317 SSO1276 SSO1282 SSO2616 SSO2670 SSO3046 APE0301 APE1399 APE1578 APE2261 aq_2160 TM0028 TM0058 TM0074 TM0303 TM0498 TM0501 TM1064 TM1152 TM1194 TM1220 TM1749 FN0399 FN1110 FN1501 FN1524 FN1649 DR1568 CAC0179 CAC3182 CAC3629 CAC3636 CAC3642 Cgl2601_2 L148976 L93148 SPy0296 SPy2003 SP1888 SA0847 SA0851 SA1212 SA2252 lin2297 BS_appD BS_dppD BS_oppD BH0028 BH0350 BH0570 BH1799 BH2077 BH3640 BH3646 ddpD dppD nikD oppD Z2226 ZdppD ZnikD ZoppD ECs1746 ECs2088 ECs4346 ECs4421 YPO2185 YPO3452 YPO4000 STM1743 STM3627 VC0617 VC1094 PA4505 HI1121 HI1185 PM0239 PM1907 RSc1884 RSc2867 HP0301 jhp0286 Cj1581c AGc2212 AGc4569 AGl1475 AGl2743 AGl2781 AGl3200 AGl360 AGl525 AGl868 AGpA366 AGpT258 SMa0108 SMa1365 SMa1371 SMa1647 SMa2081 SMb20478_2 SMc00789 SMc01528 SMc02423 SMc03125 BMEI0437 BMEII0200 BMEII0206 BMEII0222 BMEII0287 BMEII0490 BMEII0507 BMEII0863 mll0596 mll5437 mll9133 mll9147 mlr3400 mlr5419 mlr5516 mlr5893 mlr6085 mlr6674 mlr9270 CT201 CT690 CPn0201 CPn0682 BB0334 UU560_2 MYPU_2850 MYPU_4120 MPN217 MG079 CLUSTER 2 TVN0511 >COG0445 (Putative duplication confidence score 1.000) CLUSTER 1 YGL236c SPBC30B4.06c aq_761 TM0263 FN0007 FN1723 DR0027 CAC3733 L97777 SPy2185 SP0120 SA2500 lin2942 BS_gidA BH4061 sll0202 alr3561 gidA ZgidA ECs4683 YPO4130 STM3874 BU001 VC2775 PA5565 HI0582 PM1485 XF2106 NMB0193 NMA0074 RSc3328 HP0213 jhp0199 Cj1188c AGc5134 SMc02798 BMEI0007 mll4482 CC3755 RP056 RC0084 CT498 CPn0617 TP0044 BB0178 UU039 MYPU_2530 MPN557 MG379 CLUSTER 2 DR1681 >COG0449 (Putative duplication confidence score 0.714) CLUSTER 1 VNG0006G MA3023 MTH171 MJ1420_3 MK0127 PH0243 PAB2201 PAE3025 SSO0382 SSO1268 APE1205 YKL104c YMR084w YMR085w SPBC12C2.11 ECU07g1280 aq_301 TM0148 FN0452 DR0302 CAC0158 Cgl2219 Rv3436c MT3542 ML0371 L33556 SPy1280 SP0266 SA1959 lin0734 BS_glmS BH0268 sll0220 alr3464 glmS ZglmS ECs4671 YPO4118 STM3861 BU026 VC0487 PA5549 HI0429 PM1731 XF0141 NMB0031 NMA0276 RSc0178 HP1532 jhp1420 Cj1366c AGc3284 SMa0878 SMc00231 BMEII0685 mll0833 mlr6386 mlr6774 CC0118 CT816 CPn0968 TP0861 CLUSTER 2 MJ1420_1 Ta0479 TVN0825 SSO0016_1 FN0628 lin0034 lin2107 STM0573 STM4539 >COG0450 (Putative duplication confidence score 1.000) CLUSTER 1 AF0270 MA4103 MTH159 MJ0736 Ta0152 Ta0473 Ta0954m TVN0222 TVN0443 TVN0444 TVN1099 PH1217 PAB1673 PAE2085 SSO2121 APE2278 YBL064c YDR453c YML028w SPCC576.03c ECU03g1190 aq_486 aq_858 TM0807 FN1983 DR2242 Rv2428 MT2503 ML2042 L135351 SPy2079 SA0366 lin1645 BS_ahpC BS_ykuU BH2665 sll0755 slr1198 alr4404 alr4641 ahpC ZahpC ECs0644 YPO3194 STM0402 STM0608 BU182 VC0731 PA0139 PA0848 PA3450 PA3529 PM0795 XF1530 RSc0754 RSc1646 RSp0245 HP1563 jhp1471 Cj0334 AGc2729 SMb20964 BMEII0577 mll2432 mll3745 CC2918 RP327 RC0451 CT603 CPn0778 TP0509 CLUSTER 2 SPAC27D7.12c >COG0452 (Putative duplication confidence score 0.875) CLUSTER 1 AF1645 VNG0572G MA1280 MTH1216 MJ0913 MK0713 Ta0889 TVN0973 PH1444 PAB1897 PAE1204 SSO0210 APE1959 SPAC15E1.04_1 aq_815 TM1687 FN0711 DR0579 CAC1720 Cgl1566 Rv1391 MT1436 ML0543 L166912 SPy1222 SP0165 SP1231 SA1054 lin1939 BS_yloI BH2510 sll0250 all3111 dfp Zdfp ECs4514 YPO0048 STM3730 VC0215 PA5320 HI0953 PM1153 XF0149 NMB1658 NMA1916 RSc2461 HP0841 jhp0779 Cj0822 AGc552 SMc01161 BMEII0235 mlr3167 CC3712 BB0812 CLUSTER 2 YIL083c YKL088w YKR072c YOR054c SPCC4B3.18 Cgl1650 L167675 SPy1221 SP1230 BS_spoVFB BH2402 >COG0464 (Putative duplication confidence score 1.000) CLUSTER 1 AF0477 AF1297 AF2098 VNG1462G VNG1472G VNG1654G VNG1667G VNG2062G VNG6199G MA1813 MA3527 MA4064 MA4575 MTH1639 MJ1156 MK0486_1 MK0486_3 Ta0840 Ta1175 TVN0382 TVN0947 PH0687 PH1278 PH1840 PAB1478 PAB1789 PAB2086 PAE0696 PAE3171 SSO0176 SSO0421 SSO0909 SSO2420 SSO2831 APE0960 APE1367 APE2474 YBR080c YBR186w YDL126c YER047c YGR028w YGR270w YKL197c YLL034c YLR397c YNL329c YPL074w YPR173c SPAC1565.08 SPAC17A5.01 SPAC1834.11c SPAC2G11.06 SPAC31G5.19 SPAC328.04 SPBC16E9.10c SPBC56F2.07c SPBC947.01 SPBP22H7.05c SPCC24B10.10c SPCC553.03 ECU01g1230 ECU03g1410 ECU05g1140 ECU11g0840 ECU11g1030 DR0647 Cgl1461 Rv0282_2 Rv0435c Rv1798_2 Rv2115c Rv3868_2 Rv3884c_2 MT0295_2 MT0451 MT1847_2 MT2175 MT3981_2 MT3999_2 ML0055_2 ML1316 ML1536_2 ML2537_2 BS_spoVK BH2289 BH2363 slr0374 slr0480 all1872 all2243 all3141 all4233 all4296 alr7046 alr7200 alr7528 alr8015 PA0657 RSc1961 Cj0377 AGpT158 SMb20196 SMc02733 mlr2758 mlr6544 CLUSTER 2 MA2066 >COG0468 (Putative duplication confidence score 1.000) CLUSTER 1 AF0993 AF2096 VNG1665G VNG1711G_1 VNG2473G MA0074 MA3545 MTH1383 MTH1693 MJ0254 MJ0869 MK1032 MK1442 Ta1036 Ta1104 TVN0457 TVN0559 PH0119 PH0263_1 PH0263_3 PAB0164 PAB2270 PAE0654 PAE3238 SSO0250 APE0119 YDR004w YER095w YER179w SPAC20H4.07 SPAC644.14c SPAC8E11.03c ECU11g0820 aq_2150 TM1859 FN0547 DR2340 CAC1815 Cgl1910 Rv2737c_1 Rv2737c_3 MT2806_1 MT2806_3 ML0987_1 ML0987_3 L0260 SPy2116 SP1940 SA1128 lin1435 BS_recA BH2383 sll0569 all3272 recA ZrecA ECs3556 YPMT1.50c YPO3307 STM2829 VC0543 PA3617 HI0600 PM1817 XF0123 NMB1445 NMA1658 RSc0551 HP0153 jhp0141 Cj1673c AGc3441 SMc00760 BMEI0787 mlr0030 CC1087 RP761 RC1182 CT650 CPn0762 TP0692 BB0131 UU084 MYPU_2520 MPN490 MG339 CLUSTER 2 SPAC3C7.03c >COG0469 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0324G_1 MA3890 MJ0108 Ta0896 TVN1020 PH0570 PAB1441 PAE0819 SSO0981 APE0489 YAL038w YOR347c SPAC4H3.10c ECU09g0640 TM0208 FN1765 DR2635 CAC0518 CAC1036 Cgl2036 Rv1617 MT1653 ML1277 L0003 SPy1282 SP0897 SA1520_1 lin1605_1 BS_pykA_1 BH3163_1 sll0587 sll1275_1 all2564 all4008_1 pykA pykF ZpykA ZpykF ECs2383 ECs2564 YPO2064 YPO2393 STM1378 STM1888 BU319 VC0485 VC2008 VCA0708 PA1498 PA4329 HI1573 PM0653 XF0824 NMB0089 NMA0177 RSc0572 RSp1448 Cj0392c AGl2146 SMc04005 BMEI0292 mll3819 CC2051 CT332 CPn0097 BB0348 UU186 MYPU_2400 MPN303 MG216 CLUSTER 2 Cgl2847 >COG0474 (Putative duplication confidence score 1.000) CLUSTER 1 MA1678 MA2501 MA2833 MA4082 MA4378 MTH1001 MTH1516 MTH481 MTH482 MJ1226 Ta1045 YAL026c YDR038c YDR039c YDR040c YDR093w YER166w YGL006w YGL008c YGL167c YIL048w YMR162c YPL036w SPAC1071.10c SPAC24B11.12c SPAC4F10.16c SPAC6C3.06c SPAC821.13c SPAPB2B4.04c SPBC31E1.02c SPBC839.06 SPBC887.12 SPCC1020.01c ECU06g0930 ECU09g1440 aq_724 FN1022 CAC1269 CAC2137 Cgl1510 Rv0107c Rv0425c Rv0908 Rv1997 MT0116 MT0440 MT0931 MT2053 ML2671 L117821 L168650 L2866 L76107 L85514 SPy0623 SP1551 SP1623 lin0814 lin0832 lin2836 BS_yloB BH2515 sll0672 sll1076 sll1614 slr0822 all3245 all3375 alr1715_1 alr3723 mgtA ZmgtA ECs5219 YPO0451 YPO1661 STM3763 STM4456 PA1429 PA4825 SMa1155 BMEII0056 mlr6609 UU264 MYPU_1550 MPN209 MG071 CLUSTER 2 YEL031w YOR291w SPAC29A4.19c SPACUNK4.07c SPCC1672.11c ECU02g0330 ECU07g1500 >COG0476 (Putative duplication confidence score 1.000) CLUSTER 1 AF0531 AF0553 VNG0084G MA0255 MTH1571 Ta0844 TVN0943 PH0056 PAB2302 PAE1056 SSO0298 APE1594 YDR390c YHR111w_1 YHR171w YKL210w YPL003w YPR066w YPR180w SPAC24H6.12c SPAC2G11.10c_1 SPAC323.06c SPAC4C5.04 SPBC16H5.03c SPBC211.09 SPBC6B1.05c ECU02g1340 ECU03g0930 ECU03g1290_1 ECU09g0860 aq_1329 FN1755 DR2269 CAC2923 Cgl0209_1 Cgl1994_1 Rv1355c_1 Rv3116_1 Rv3206c_1 MT1398_1 MT3198_1 MT3301_1 ML0817_1 ML1751_1 SP0695 SA2071 lin1041 BS_moeB BS_yjbU BH1419 sll1536_1 all1432 all2906_1 alr7504 moeB thiF ZmoeB ZthiF ECs0904 ECs4915 YPO1494 YPO3741 STM0845 STM4162 VC0063 VCA0618 PA2103_1 PA4663 HI1449 PM0695 XF0466_2 NMB2062 NMA0373 RSc0351 HP0814 jhp0750 Cj1046c AGc111 SMc02864 BMEI1940 mll5577 mll6192_2 mlr6140 CC3726 CLUSTER 2 Rv2338c MT2401 >COG0479 (Putative duplication confidence score 1.000) CLUSTER 1 AF0682 VNG1308G MTH1850_1 MJ0092_1 MK0132_1 Ta1002 TVN0746 PAE0717 SSO2357 APE0946 YLL041c SPAC140.01 aq_553 aq_655 DR0951 Cgl0368 Rv0247c Rv1553 Rv3319 MT0261 MT1604 MT3420 ML0696 SA0996 BS_sdhB BH3091 sll0823 sll1625 all0945 frdB sdhB ZfrdB ZsdhB ECs0749 ECs5134 YPO0359 YPO1112 STM0735 STM4342 VC2088 VC2657 PA1584 HI0834 PM0200 XF1073 NMB0951 NMA1146 RSc1993 HP0191 jhp0177 Cj0410 Cj0438 AGc4790 SMc02466 BMEI0162 mll4260 CC3526 RP044 RC0069 CT591 CPn0790 CLUSTER 2 PAE2690 >COG0482 (Putative duplication confidence score 1.000) CLUSTER 1 YDL033c SPAC23H4.04 aq_1224 aq_899 TM0520 FN0765 FN1920 DR1759 CAC2233 Cgl1211 Rv3024c MT3108 ML1707 L52034 SPy2188 SP0118 SA1449 lin1547 BS_yrrA BH1261 sll0844 all1359 trmU ZycfB ECs1605 YPO1638 STM1234 BU261 VC1128 PA2626 HI0174 PM1336 XF1440 NMB1556 NMA1744 RSc2723 HP1335 jhp1254 Cj0053c AGl2270 SMc00659 BMEI0428 mlr2824 CC0897 RP306 RC0410 CT287 CPn0438 BB0682 UU402 MYPU_5580 MPN422 MG295 CLUSTER 2 aq_898 FN0563 HP0013 jhp0011 Cj1633 >COG0492 (Putative duplication confidence score 1.000) CLUSTER 1 AF1554 VNG1259G VNG2301G VNG6074G VNG6075G VNG6451G VNG6452G VNG7055 VNG7154 MA1368 MTH708 MJ1536 MK1561 Ta0984 TVN0470 TVN1129 PH1426 PAB0500 PAE1725 PAE2744 SSO2222 SSO2416 SSO2765 APE1061 YDR353w YHR106w ECU01g0680 ECU02g0940 aq_407 aq_500 TM0134 TM0869 FN1163 FN1984_1 DR0412 DR1982 DR2623 CAC0869 CAC1548 CAC3082 Cgl0673 Cgl3030 Rv3913 MT4032 ML2703_1 L00196 L0196 SPy0850 SP1458 SP1563 SA0719 SA1311 SA2162 lin2075 lin2489 lin2621 BS_trxB BS_ycgT BS_ypdA BS_yumC BH0657 BH1428 BH1429 BH1493 BH1623 BH3408 BH3571 slr0600 all0737_1 all4510 alr2204 trxB ZtrxB ECs0973 YPO1374 STM0958 BU314 VC1182 PA0849 PA2616 PA4170 HI1158 PM0573 XF1448 NMB1324 NMA1538 RSc1139 RSc2342 HP0825 HP1164 jhp0764 jhp1091 Cj0146c Cj0559 Cj1725 AGc2995 AGc3970 AGc405 SMa1890_2 SMa1891 SMc01159 SMc01224 BMEI0512 BMEI0958 mll0792 mll2552 mlr4645 CC2871 RP445 RP514 RC0618 RC0637 CT099 CPn0314 TP0814 BB0515 UU074 MYPU_7130 MPN240 MG102 CLUSTER 2 SA2370 >COG0493 (Putative duplication confidence score 0.875) CLUSTER 1 MA3787 Ta0414 TVN1157 PH0876 PH1873 PAB1214 PAB1738 PAE3227 APE0935 YDL171c_4 SPAPB1E7.07_4 aq_2064 TM1217_2 TM1640 DR0182 CAC0764 CAC1674 Cgl0185 Rv3858c MT3973 ML0062 L114827 SA0431 lin1844 BS_gltB BH1729 sll1027 aegA_2 gltD yeiT ygfK_2 ygfT_2 Z3401 Z4217_2 ZgltD ZyffG_2 ZygfT_2 ECs3038 ECs3330_2 ECs3751_2 ECs3759_2 ECs4092 YPO0342_2 YPO3558 STM2186 STM2479_2 STM3331 VC2374 VC2377 PA0440 PA5035 XF2709 RSc2964 Cj0009 AGl2104 SMc01814 SMc04026 BMEI1638 BMEII0039 mll1646 mll3029 CC3606 RP006_1 RC0005_2 TP0735 CLUSTER 2 YDR376w SPBC3B8.01c ECU11g1310 DR0496 Cgl2697 Cgl2757 Rv0886_2 Rv3106 MT0909_2 MT3189 ML0666 ML2134_2 >COG0503 (Putative duplication confidence score 0.923) CLUSTER 1 VNG0559G VNG2117C MA0717 MTH1320 MJ1655 MK0610 PH1691 PAB2035 PAE2071 SSO0233 APE0060 APE1080 YDR441c YML022w SPAC23A1.03 TM1384 FN1483 FN2073 DR0568 DR0878 DR1617 CAC0873 CAC2275 CAC3224 Cgl1615 Rv2584c MT2661 L134453 L159396 L22735 SPy0268 SPy0927 SPy1136 SP1577 SP1847 SP1979 SA0373 SA0454 SA1461 lin0231 lin1559 lin1998 BS_apt BS_purR BS_xpt BH0062 BH1241 BH1514 sll1430 alr4582 apt Zapt ECs0522 YPO3123 YPO4019 STM0483 VC1053 PA1543 PA5298 HI1230 PM0363 NMB1662 NMA1920 RSc0417 HP0572 jhp0519 Cj0927 AGc4069 AGl877 SMb21280 SMc02698 BMEI0476 mll2701 TP1039 BB0777 UU488 MYPU_3220 MPN395 MG276 CLUSTER 2 gpt Zgpt ECs0265 YPO3225 STM0317 BU251 VC2277 HI0674 HI0692 PM1369 AGc3180 SMc00945 BMEI0940 mll0141 >COG0504 (Putative duplication confidence score 1.000) CLUSTER 1 AF0252 VNG1830G MA3279 MTH419 MJ1174 MK0205 Ta0044m TVN0033 PH1792 PAB0231 PAE3518 SSO0201 APE1604 YBL039c YJR103w SPAC10F6.03c ECU11g0480 ECU11g0880 aq_1334 TM0803 DR1573 CAC2892 Cgl1383 Rv1699 MT1738 ML1363 L88252 SPy1894 SP0494 SA1929 lin2704 BS_ctrA BH3792 sll1443 alr5000 pyrG ZpyrG ECs3640 YPO3377 STM2953 BU416 VC2448 PA3637 HI1077 PM1872 XF1288 NMB1554 NMA1742 RSc1126 HP0349 jhp0323 Cj0027 AGc2984 SMc01025 BMEI0849 mll0606 CC1720 RP378 RC0523 CT183 CPn0236 TP0305 BB0575 UU284 MYPU_6660 CLUSTER 2 PA2268_1 AGpA703 >COG0512 (Putative duplication confidence score 1.000) CLUSTER 1 AF1602 VNG0386Gm VNG1646G MA2986 MTH1656 MJ0238 MK0436 Ta0807 TVN1023 PAB2046 PAE2459 SSO0894 APE2555 YKL211c_1 YNR033w_1 SPBC1539.09c_1 SPBP8B7.29_1 aq_549 TM0141_1 FN1731 DR0196_2 DR1766 CAC3162 Cgl0970_1 Cgl2972 Rv0013 MT0016 ML0015 L0053 L0178 SPy1991 SP1816 SA0668 SA1200 lin1673 lin2892 BS_pabA BH0091 slr0055 all0269 all0414_2 alr3233_2 alr3443_1 pabA trpD_1 ZpabA ZtrpD_1 ECs1835_1 ECs4211 YPO0169 YPO2207 STM1724_1 STM3469 BUpT02 BUpT04 VC1173 VC2619 PA0649 PA1002 HI1171 HI1388 PM0583 PM1463 XF0211 XF1915 NMB0966 NMA1163 RSc2882 HP1281 jhp1202 Cj0346_1 Cj0861c AGc4162_2 SMc02725_2 BMEI0449_2 mlr2774_2 CC1897 CLUSTER 2 PA1903_2 PA4214_2 >COG0513 (Putative duplication confidence score 1.000) CLUSTER 1 AF2254 MA3956 MTH203 MJ0669 Ta0297 TVN1303 SSO1889 SSO2036 YBR142w YBR237w YDL031w YDL084w YDL160c YDR021w YDR194c YDR243c YFL002c YGL064c YGL078c YGL171w YHR065c YHR169w YJL033w YJL138c YKR024c YKR059w YLL008w YLR276c YMR290c YNL112w YNR038w YOR046c YOR204w YPL029w YPL119c SPAC1006.07 SPAC1093.05 SPAC17G6.14c SPAC1F5.10 SPAC1F7.02c SPAC22F3.08c SPAC30D11.03 SPAC31A2.07c SPAC637.11 SPAC823.08c SPBC12C2.06 SPBC17D1.06 SPBC21H7.04 SPBC24C6.02 SPBC4F6.07c SPBC543.06c SPBC691.04 SPBC776.09 SPBP8B7.16c SPCC10H11.01 SPCC1494.06c SPCC1795.11 SPCC285.03 SPCC63.11 ECU02g0670 ECU02g1520 ECU05g1270 ECU06g1250 ECU07g1060 ECU08g1080 ECU09g1200 ECU09g1640 ECU10g0440 ECU10g0690 ECU10g1680 aq_613 FN1975 DR0335 DR1624 CAC0778 CAC0784 CAC2748 CAC3010 Cgl0747 Cgl1130 Cgl1415 Rv1253 Rv3211 MT1292 MT3307 ML0811 L0339 L0340 SPy1369 SPy1415 SPy1659 SP0761 SP1483 SP1586 SA1387 SA1885 lin0859 lin1214 lin1488 lin1833 BS_deaD BS_ydbR BS_yfmL BS_yqfR BH1385 BH2384 BH3348 slr0083 alr1223 alr4718 dbpA deaD rhlB rhlE srmB ZdbpA ZdeaD ZrhlB ZrhlE ZsrmB ECs0875 ECs1927 ECs3442 ECs4043 ECs4713 YPO1776 YPO2708 YPO3488 YPO3869 STM0820 STM1655 STM2643 STM3280 STM3914 BU372 VC0305 VC0660 VC1407 VC2564 VCA0061 VCA0204 VCA0768 VCA0804 VCA0990 PA0428 PA0455 PA2840 PA3466 PA3861 PA3950 HI0231 HI0422 HI0892 PM1112 PM1840 PM1921 XF0192 XF0252 XF2696 NMB1368 NMB1422 NMA1580 NMA1634 RSc0539 RSc0622 RSc0952 RSc2211 HP0247 jhp0232 AGc3366 AGc4238 AGc4993 AGl1362 SMb20880 SMc00522 SMc01090 SMc03877 BMEI0275 BMEI0934 BMEI1035 BMEI1824 mll0224 mlr0349 mlr3852 mlr4393 CC0657 CC0835 CC1847 RP669 RC1020 TP0770 UU582 MYPU_0690 MPN443 MPN623 MG308 MG425 CLUSTER 2 YBL111c YBL112c YDR545w YEL077c YER190w YFL066c YGR296w YHL050c YHR218w YHR219w YIL177c YJL225c YLL066c YLL067c YLR466w YLR467w YML133c YNL339c YOR396w YPL283c YPR204w >COG0514 (Putative duplication confidence score 1.000) CLUSTER 1 MA4507 APE1353_2 YMR190c SPAC212.11 SPAC2G11.12 ECU07g1130 FN0578 DR1289 CAC2687 Cgl0869 L0268 SA0676 SA1313 lin2056 lin2900 BS_recQ BS_yocI BH1607 slr1536 alr0205 alr3451 alr4842 recQ Z4802 Z4803 ZrecQ ECs4283 ECs4284 ECs4752 YPO3833 STM3958 VC0196 PA3344 HI0728 PM1427 XF1381 NMB0274 NMA2213 RSc3025 AGc92 SMc01566 mll4050 CC3465 TP0103 CLUSTER 2 Z4801 ECs4282 >COG0516 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1001G_1 MTH142_1 MJ1616_1 MK1600_1 Ta0219_1 TVN1375_1 PH0307_1 PAB1250_1 YAR073w_1 YHR216w_1 YLR432w_1 YML056c_1 SPBC2F12.14c_1 aq_2023_1 TM1347_1 FN1231_1 DR1878_1 CAC2701_1 Cgl0587_1 Cgl2623_1 Rv1843c_1 Rv3411c_1 MT1891_1 MT3519_1 ML0387_1 ML2066_1 L21264_1 SPy2206_1 SP2228_1 SA0375_1 lin0179_1 lin2901_1 BS_guaB_1 BH0020_1 guaB_1 ZguaB_1 ECs3370_1 YPO2871_1 STM2511_1 VC0767_1 PA3770_1 HI0221.1_2 HI0221_1 PM0295_1 XF2430_1 NMB1201_1 NMA1372_1 RSc1429_1 HP0829_1 jhp0768_1 Cj1058c_1 AGc1108_1 SMc00815_1 BMEII0896_1 mlr8350_1 CC1617_1 CPn0172a BBB17_1 CLUSTER 2 VNG1001G_3 MTH142_3 MJ1616_3 MK1600_3 Ta0219_3 TVN1375_3 PH0307_3 PAB1250_3 APE1507 YAR073w_3 YAR075w YHR216w_3 YLR432w_3 YML056c_3 SPBC2F12.14c_3 aq_2023_3 TM1347_3 FN1231_3 DR1878_3 CAC2701_3 CAC3471 Cgl0587_3 Cgl0588 Cgl2623_3 Rv1843c_3 Rv3410c Rv3411c_3 MT1891_3 MT3518 MT3519_3 ML0387_3 ML0388 ML2066_3 L158186 L21264_3 SPy1135 SPy2206_3 SP1249 SP2228_3 SA0375_3 SA1172 lin0179_3 lin2901_3 BS_guaB_3 BS_yumD BH0020_3 slr1722 alr0051 guaB_3 guaC ZguaB_3 ZguaC ECs0108 ECs3370_3 YPO2871_3 YPO3428 STM0141 STM2511_3 BU204 VC0767_3 VCA0197 PA3770_3 HI0221_3 PM0295_3 XF2430_3 NMB1201_3 NMA1372_3 RSc1429_3 HP0829_3 HP0854 jhp0768_3 jhp0790 Cj1058c_3 AGc1108_3 SMc00815_3 BMEII0896_3 mlr8350_3 CC1617_3 CPn0172 BBB17_3 >COG0532 (Putative duplication confidence score 1.000) CLUSTER 1 AF0768 VNG1997G MA1525 MTH259 MJ0262_1 MJ0262_3 MK1595 Ta1112 TVN0453 PH1095_1 PH1095_3 PAB0755_1 PAB0755_3 PAE1513 SSO0228 APE2374 YAL035w_2 YOL023w SPAC56F8.03 SPBC1271.15c ECU09g0070 aq_2032 TM0775 FN2020 DR1799 CAC1802 Cgl1939 Rv2839c MT2905 ML1556 L0372 SPy1721 SP0556 SA1112 lin1362 BS_infB BH2413 slr0744 alr3832 infB ZinfB ECs4049 YPO3496 STM3286 BU377 VC0643 PA4744 HI1284 PM0759 XF0235 NMB1643 NMA1897 RSc1289 HP1048 jhp0377 Cj0136 AGc131 SMc02914 BMEI1965 mlr5554 CC0042 RP552 RC0816 CT096 CPn0317 TP0891 BB0801 UU320 MYPU_2050 MPN155 MG142 CLUSTER 2 MK1564 >COG0542 (Putative duplication confidence score 1.000) CLUSTER 1 MTH284 YDR258c YLL026w SPBC16D10.08c SPBC4F6.17c ECU11g1420 aq_1296 aq_1672 TM0198 TM1391 FN1941 DR0588 DR1046 DR1117 CAC0904 CAC0959 CAC1824 CAC3189 Cgl1714 Cgl1741 Cgl2622 Cgl2721 Rv0384c Rv3596c MT0397 MT3703 ML0235 ML2490 L0221 L0222 L166407 SPy0888 SPy1509 SPy2073 SP0338 SP0820 SP2194 SA0483 SA0835 SA2336 lin0264 lin0996 lin2309 BS_clpC BS_clpE BH0103 BH2179 sll0020 slr0156 slr1641 alr1963 alr2322 alr2999 alr5084 clpA clpB Z0254 ZclpA ZclpB ECs0223 ECs0968 ECs3455 YPO0506 YPO0971 YPO1368 YPO1471 YPO2946 YPO3275 YPO3599 STM0272 STM0945 STM2660 VC0711 VC1144 VCA0116 PA0090 PA0459 PA1662 PA2371 PA2620 PA2725 PA3365 PA4542 HI0859 PM1704 XF0381 XF1443 NMB0836 NMB1472 NMA1045 NMA1683 RSc1335 RSc2464 RSp0749 HP0033 HP0264 jhp0029 jhp0249 Cj0509c Cj1108 AGc2524 AGl1041 AGl1346 SMc02109 SMc02433 BMEI0195 BMEI0816 mll0663 mll2335 mll3429 CC0878 CC2468 RP036 RC0059 CT113 CT286 CPn0144 CPn0437 TP0071 TP0549 TP0801 BB0369 BB0834 UU391 MPN531 MG355 CLUSTER 2 Rv2667_2 MT2741_2 >COG0543 (Putative duplication confidence score 1.000) CLUSTER 1 AF0528 MA0584 MA3786 MTH1212 MJ1446 MK0564 Ta0047 Ta0403 TVN0004 TVN1171 PH0878 PH1291 PH1874 PH1965 PAB0639 PAB1150 PAB1213 PAB1737 PAB1785 SSO0612 YIL043c YKL150w YML087c YML125c SPAC17H9.12c SPCC970.03 aq_1305 aq_2098 TM0334 TM1639 FN0423 CAC1514 CAC1860 CAC2651 Cgl2354_1 Cgl2732 Rv0385 Rv1937_1 MT0398 MT1987_1 L183563 SP0963 lin1948 BS_pyrDII BH2535 ubiB ZubiB ECs4772 YPO3116 YPO3768 STM2093 STM2549 STM3979 VC0312 PA2514 PA2516 PA4331 PA5236 NMB1359 NMA1571 RSc1091 RSc2434 AGc2205 RP006_2 RC0005_3 TP0736 CLUSTER 2 YOR037w >COG0545 (Putative duplication confidence score 1.000) CLUSTER 1 YDR519w YLR449w_2 YML074c_2 YNL135c SPAC27F1.06c SPBC1347.02 SPBC839.17c DR1839 Cgl0807 slr1761 alr0577 fklB fkpA ZfklB ZfkpA ECs4198 ECs5185 YPO0195 YPO3532 STM3453 STM4397 BU533 VC0354 VC2568 VCA0661 PA3262 PA3717 PA4572 PA5254 HI0574 PM1349 PM1898 XF1605 NMB0027 NMB1567 NMA0273 NMA1756 RSc0784 RSc1565 CC2799 CC3636 CT541 CPn0661 TP0862 CLUSTER 2 XF0644 >COG0548 (Putative duplication confidence score 1.000) CLUSTER 1 AF1280 MA4515 MTH183 MJ0069 MK1631 PH1718 PAB0292 PAE2882 SSO0156 APE1461 YER069w_1 SPAC4G9.09c_1 aq_2068 TM1784 DR1420 DR2442 CAC2389 Cgl1363 Rv1654 MT1692 ML1408 L0107 SA0176 lin1631 BS_argB BH2898 slr1898 alr1245 argB ZargB ECs4888 YPO3925 STM4122 BU049 VC2643 PA5323 PM1119 XF1001_1 NMB1074 NMA1275 RSc0033 Cj0226 AGc666 SMc01726 BMEII0273 mlr4826 CC0283 RC0139 CLUSTER 2 argA_1 ZargA_1 ECs3675_1 YPO1022_1 STM2992_1 BU456_1 VC2316_1 PA5204_1 PM0828_1 NMB1876_1 NMA0580_1 RSc1250_1 >COG0553 (Putative duplication confidence score 1.000) CLUSTER 1 AF2350 VNG6139G VNG7099 MA0189 TVN0682 PH0900 PAB0591 SSO1653 SSO1655 APE0413 YAL019w YBR073w YBR114w YBR245c YDR334w YER164w YFR038w YGL150c YGL163c YIL126w_1 YJR035w YLR032w YLR247c YOR191w YOR290c_1 YOR304w YPL082c SPAC11E3.01c SPAC1250.01_1 SPAC13G6.01c SPAC144.05 SPAC15A10.03c SPAC1783.05 SPAC17A2.12 SPAC20G8.08c SPAC22F3.03c SPAC25A8.01c SPAC3G6.01 SPAC3G6.12 SPBC1826.01c SPBC23E6.02 SPBC582.10c SPBP35G2.10 SPCC1235.05c SPCC1620.14c_1 SPCC330.01c SPCP25A2.02c ECU01g0350 ECU03g1530 ECU06g0820 ECU09g0410 ECU09g1890 ECU10g1320 TM0990 FN1160 FN1386 DR1258 DR1259 DRB0136 CAC2996 CAC3303 CAC3441 Cgl0717 Cgl1138 Cgl1599 Cgl1697 Rv2101 MT2161 L104021 SPy0342 SP1523 lin1348 lin1685 BS_yqhH BS_ywqA BH0969 BH2817 BH2913 sll1366 all4900 all7026 all7172 alr4398 hepA Z0067 Z5899 ECs0063 ECs5261 YPO0517 STM0096 VC1760 VC2506 PA0799 PA3308 HI0616 PM1837 XF0680 XF2295_1 XF2528 SMc02152 CT555 CT708 CPn0835 CPn0849 MPN020 MG018 CLUSTER 2 FN0414 pli0027 PM0696 >COG0557 (Putative duplication confidence score 1.000) CLUSTER 1 VNG2647G YDR293c_2 YMR287c_2 YOL021c SPAC2C4.07c SPBC26H8.10 SPBC609.01 SPCC16C4.09 ECU03g0700 aq_2046 TM0722 FN0608 DR0020 DR0353 CAC0715 Cgl2185 L0323 L25961 SPy0503 SP0975 SA0735 lin2543 BS_yvaJ BH3553 sll1290 sll1910 all4450 alr1240 vacB ZvacB ECs5155 YPO0380 STM4368 BU565 VC2599 PA4937 HI0861 PM1954 XF1987 NMB0282 NMB1200 NMA1371 NMA2205 RSc1228 RSc2779 HP1248 jhp1169 Cj0631c AGc2395 SMc01365 BMEII0665 mll0040 mlr0841 CC2453 CT397 CPn0504 TP0805 UU057 MYPU_3510 MPN243 MG104 CLUSTER 2 SPCC23B6.06 >COG0563 (Putative duplication confidence score 1.000) CLUSTER 1 AF0676 VNG1724G MA1096 PH1117 PAB0739 YDR226w YER170w YKL024c SPAC4G9.03 SPCC1795.05c ECU06g0650 aq_078 TM1479 FN1298 DR2117 CAC3112 Cgl0542 Rv0733 MT0757 ML1832 L140714 SPy0074 SP0231 SA2027 lin2760 BS_adk BH0155 sll1059 sll1815 all4196 alr0068 adk Zadk ECs0527 YPO3118 STM0488 BU484 VC0986 PA3686 HI0349 PM0284 XF0275 NMB0823 NMA1032 RSc2533 HP0618 jhp0561 Cj0639c AGc3521 SMc01288 BMEI0778 mlr0322 CC1269 RP638 RC0985 CT128 CPn0244 TP0595 BB0417 UU251 MYPU_5670 MPN185 MG171 CLUSTER 2 FN0012 DR0202 DR0494 DR0974 DR2273 CAC2481 Cgl0315 Cgl1057 L16101 L88237 SPy1995 SP0837 lin1175 lin1449 BS_yqaC BH1014 all3160 alr4795 PA4799 AGc2655 SMc01742 mlr5488 >COG0565 (Putative duplication confidence score 1.000) CLUSTER 1 AF1801 VNG1347C MA0682 MTH1849 MJ1476 MK0519 Ta1010m TVN0579 SSO0747 APE0555 DR0576 slr0120 alr4542 yfhQ Z3799 ECs3398 YPO2898 STM2545 VC0746 PA3817 HI0380 PM0316 XF2475 NMB1348 NMA1560 RSc1161 AGc3426 SMc00482 BMEI0794 mlr0038 CC2520 RC0160 CLUSTER 2 lasT ZlasT ECs5361 STM4600 >COG0567 (Putative duplication confidence score 1.000) CLUSTER 1 YIL125w SPBC3H7.03c DR0287 Cgl1105_3 Rv1248c_3 MT1286_3 ML1095_3 SA1245 BS_odhA BH2206 sucA ZsucA ECs0751 YPO1113 STM0736 BU302 VC2087 PA1585 HI1662 PM0277 XF1550 NMB0955 NMA1149 RSc1269 RSp1364 AGc4776 SMc02482 BMEI0140 mll4301 CC0339 RP180 RC0227 CT054 CPn0378 CLUSTER 2 Cgl1105_1 Rv1248c_1 MT1286_1 ML1095_1 >COG0568 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1452 aq_1490 TM1451 FN1317 FN1318 DR0916 CAC1300 CAC2052 Cgl1865 Cgl1873 Rv2703 Rv2710 MT2777 MT2783 ML1014 ML1022 L0139 SPy0782 SP1073 SA1390 lin1491 BS_sigA BH1376 sll0184 sll0306 sll1689 sll2012 slr0653 all1692 all5263 all7179 all7608 all7615 alr3800 alr3810 alr4249 rpoD rpoH rpoS ZrpoD ZrpoH ZrpoS ECs3595 ECs3950 ECs4310 YPO0643 YPO3355 YPO3811 STM2924 STM3211 STM3568 BU025 BU055 VC0150 VC0517 VC0534 PA0376 PA0576 PA3622 HI0269 HI0533 PM1241 PM1584 XF1350 XF2691 NMB0712 NMB1538 NMA0917 NMA1737 RSc0374 RSc1207 RSc2215 HP0088 jhp0081 Cj1001 AGc3929 AGc4439 SMc00646 SMc01563 SMc03873 BMEI0280 BMEI0378 BMEI0532 mll2466 mlr3741 mlr3862 CC3047 CC3098 RP303 RP858 RC0407 RC1329 CT615 CPn0756 TP0493 TP1012 BB0712 BB0771 UU349 MYPU_4540 MPN352 MG249 CLUSTER 2 DR2482 >COG0578 (Putative duplication confidence score 0.538) CLUSTER 1 VNG1070Gm VNG1969G Ta0633 TVN0840 SSO2526 glpA ZglpA ECs3126 YPO3826 STM2284 VCA0747 PA4991 HI0685 PM1442 CLUSTER 2 YIL155c SPCC1223.03c ECU10g0870 DR1019 Cgl1608 Rv2249c Rv3302c MT2309 MT3401 ML0713 L0013 SPy1683 SP2185 SA1142 lin1331 BS_glpD BH1095 sll1085 glpD ZglpD ECs4269 YPO3937 STM3526 VCA0657 PA3025 PA3584 XF2266 RSc3045 AGl1902 AGl1938 AGl2503 SMb20499 SMc01620 SMc02520 BMEI1749 BMEII0429 mll0710 mlr7270 BB0243 >COG0584 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1846C Ta0634 TVN0841 PAB0180 PAE1058 APE0262 YPL110c_3 YPL206c SPAC4D7.02c SPAPB1E7.05_3 ECU01g1380 TM1621 FN1891 FN1908 FN1954 DR0542 DR2084 DRB0111_2 CAC0430 CAP0015 Cgl1354 Cgl2845 Rv0317c Rv2277c Rv3842c MT0332 MT2337 MT3950 ML0074 L1007 L18600_2 L58914_2 SPy0839_2 SP0994_2 SA0036 SA0220_2 SA0820 SA0969 SA1542 lin0625_2 lin1330 BS_glpQ BS_yhdW BS_yqiK BH1080 BH1776 BH3700 all0275_2 all1051 glpQ ugpQ ZglpQ ZugpQ ECs3124 ECs4295 YPO2028 YPO2035 YPO3232 YPO3792 YPO3827 STM2282 STM3553 VC1554 VCA0136 PA0347 PA2352 PA2990 PA4792 HI0689 PM1444 RSc0502 RSc1268 AGc2533 AGl1291 AGl598 AGpA81 AGpT266 SMc02104 SMc02646 SMc03129 BMEI0819 mlr0660 mlr8455 CC2157 CC3172 CC3272 TP0257 MYPU_2630 MPN420 MPN566 MG293 MG385 CLUSTER 2 mlr9158 >COG0587 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1008 TM0461 FN1383 DR0507 CAC0516 CAC1223 Cgl2079 Rv1547 MT1598 ML1207 L0307 SPy1284 SP0895 SA1525 lin1609 BS_dnaE BS_yorL BH3169 sll1572 slr0603 all3578 alr1054 dnaE ZdnaE ECs0186 YPO1059 STM0231 BU238 VC2245 PA3640 HI0739 PM0034 XF0204 NMB1827 NMA0632 RSc2205 HP1460 jhp1353 Cj0718 AGc2379 SMc01375 BMEI1137 mll0870 CC1926 RP778 RC1211 CT545 CPn0666 TP0669 BB0579 UU415 MYPU_7190 MPN378 MG261 CLUSTER 2 Cgl0620 Rv3370c MT3480 PA0669 RSp0800 AGl3173 AGpAbx5 AGpT175 SMa0892 SMc03788 BMEI1876 mlr4428 CC3211 >COG0590 (Putative duplication confidence score 1.000) CLUSTER 1 MA2341 MA2559 MA3407 YJL035c YLR316c YPR062w SPAP27G11.04c SPBC16D10.10_2 SPCC965.14c ECU09g0990 ECU09g1960 aq_903 DR0603_1 DR1207_2 CAC0123 Cgl0229 Cgl0626 Rv0828c Rv3114 Rv3752c MT3196 MT3859 ML2474 L127182 SP0020 SA0516 lin2867 BS_yaaJ BS_yknA BH0033 sll0051 sll1631 all3284 all4872 alr4634 yfhC ZyfhC ECs3425 YPO2923 STM2568 BU255 VC0864 PA2499 PA3767 HI0906 PM0078 XF1012 NMB0933_2 NMA1129 RSc1451 AGc1234 SMc00905 BMEII1040 mll2512 mll8252 CC0231 RP831 RC1285 CT844 CPn1001 CLUSTER 2 slr1161 AGc2681 SMc01052 BMEII0619 mll5129 >COG0593 (Putative duplication confidence score 1.000) CLUSTER 1 aq_322 TM0926 DR0002 CAC0001 Cgl0001 Rv0001 MT0001 ML0001 L0274 SPy0002 SP0001 SA0001 lin0001 BS_dnaA BH0001 sll0848 alr2009 dnaA ZdnaA ECs4637 YPO4097 STM3838 BU012 VC0012 PA0001 HI0993 PM1161 XF0001 NMB1903 NMA0552 RSc3442 HP1529 jhp1417 Cj0001 AGc1670 AGc566 SMc01167 BMEI1362 BMEI1943 mll5581 CC0008 CC1058 RP601 RC0916 CT250 CT275 CPn0309 CPn0424 TP0001 BB0437 UU001 MYPU_0010 MPN686 MG469 CLUSTER 2 yfgE Z3759 ECs3358 YPO3071 STM2496 PA0947 HI1225.1 PM0017 XF0590 NMB1076 NMA1279 RSc2625 AGc2114 SMc00617 BMEI1238 mlr7968 CC1711 RP631 RC0979 >COG0595 (Putative duplication confidence score 0.800) CLUSTER 1 VNG1149Cm MA0605 MTH49 MJ0861 MK0775 PH1071 PAB1751 FN1210 DR2417m CAC1683 Cgl1924 Rv2752c MT2822 ML1512 L61727 L89418 SPy1020 SPy1876 SP0121 SP0613 SA0940 SA1118 lin1026 lin1473 BS_ykqC BS_ymfA BH2398 BH2662 slr0551 all3678 HP1430 jhp1323 Cj1710c AGc2368 SMc01929 BMEI1143 mll1350 CC1934 RP441 RC0613 UU509 UU570 MYPU_7040 MYPU_7050 MPN280 MPN621 MG139 MG423 CLUSTER 2 MTH912 MK0315 MK1258 MK1274 PH0466 PAB1035 TM0663 >COG0602 (Putative duplication confidence score 0.722) CLUSTER 1 AF0441 VNG6305C MA4197 MTH1227 MJ1645 MK0818 Ta1359 TVN0296 PH0635 PAB1446 PAE0010 SSO0624 aq_2035 CAC3625 SA0665 BS_ykvL BH2242 sll2011 alr4161 ygcF ZygcF ECs3633 YPO3374 STM2951 VC1365 PA0975 HI1189 PM0184 XF1894 NMB0529 NMA0707 RSc1449 HP0934 jhp0868 Cj0160c AGl2955 SMb20938 BMEI0093 mll5796 msl8680 CC3159 RP607 RC0933 CLUSTER 2 MTH287 FN0312 CAC0481 L72609 SPy2105 SP0205 SA2409 lin0306 alr0731 nrdG ZnrdG ECs5214 YPO3455 STM4451 VCA0512 PA2726 HI1155 PM0941 >COG0608 (Putative duplication confidence score 1.000) CLUSTER 1 AF0075 AF0291 AF0699 AF0735 VNG2333C MA0823 MA2569 MA3432 MTH1422 MTH164 MJ0831 MJ0977 MJ1071 MK0061 MK0204 MK1592 Ta0527 Ta1132m TVN1003 TVN1209 PH0059 PAB0034 PAB1596 PAE2792 PAE2794a SSO0295 aq_2155 TM1546 FN0374 FN2018 DR1126 CAC1198 CAC2232 CAC2276 Cgl1691 L0259_1 SPy0926_1 SP0611_1 SA1462_1 lin1560_1 BS_yorK BS_yrvE_1 BH1240_1 sll1354_1 all1989 alr5127 recJ ZrecJ ECs3764 YPO0890 STM3042 VC2417 PA3725 HI1214 PM0192 XF1110 NMB0842 NMA1052 RSc1115 HP0348 jhp0322 Cj0028 AGc2915 SMc00292 BMEI0728 mll0927 CC1386 RP528 RC0761 CT447 CPn0563 TP0704 BB0254 CLUSTER 2 HP0425 HP1410 jhp1303 >COG0616 (Putative duplication confidence score 0.636) CLUSTER 1 AF0856 MA2409 MJ0137 MJ1495 PH0282 PAB2437 APE2212 aq_814 TM0916 Cgl1774 alr3825 mlr4682 CLUSTER 2 VNG0620G MA4047 MTH806 MJ0651 Ta0074 TVN0029 PH1569 PAB1960 PAE2794_1 PAE3679_1 aq_2080 FN0873 FN1271 DR2096 Rv0724 MT0749 ML1839 lin1627 BS_yteI BH3198 sll1703 slr0021 all4013 all4590 sohB sppA Z1886 Z2134 Z2361 ZsohB ZsppA ECs1108 ECs1633 ECs1844 ECs2176 ECs2472 ECs2732 YPO2162 YPO2216 STM1295 STM1716 STM2605 BU283 VC1060 VC1994 PA1832 PA2973 HI1541 HI1682 PM0585 PM0671 XF2685 NMB1587 NMB2127 NMA0305 NMA1778 RSc0858 RSc1044 HP1435 jhp1328 Cj0068 AGc1130 AGc588 SMc00857 SMc01135 BMEI1535_2 BMEI1793 mll7424 mlr3201 CC0927 RP398 RP525 RC0545 RC0758 CT494 CPn0613 TP0997 >COG0619 (Putative duplication confidence score 1.000) CLUSTER 1 AF0730 AF1842 VNG1632G MA0393 MA0869 MA1419 MA1748 MA3552 MA4019 MA4022 MA4343 MTH132 MTH1705 MTH453 MJ1089 MJ1571 MK0181 PH0131 PAB2261 SSO1892 SSO2031 APE2155 TM1868 FN2006 DR2468 CAC0772 CAC1367 CAC3100 Cgl1056 Cgl1915 Cgl2771 Rv2325c MT2387 ML0849 L125503 L77627 SPy1788 SPy2193 SP0484 SP1437 SP2219 SA0927 SA2019 SA2475 lin1169 lin2748 lin2783 BS_ybaF BS_ykoC BH0166 sll0384 slr1978 alr0484 alr3945 alr3948 Z4269 ECs3801 STM2021 STM3073 HI1619 AGc1361 SMc00963 BMEI0637 UU537 MYPU_3880 MPN195 MPN431 MG181 MG302 CLUSTER 2 Cgl0520 >COG0621 (Putative duplication confidence score 1.000) CLUSTER 1 AF1247 VNG1861C MA1153 MTH826 MJ0867 MK1081 Ta0256 TVN1338 PH1875 PAB1134 PAE2939 SSO2380 APE1530 aq_284 aq_474 TM0653 TM0830 FN0475 FN1214 DR1150 CAC1286 CAC1838 Cgl1904 Rv2733c MT2803 ML0989 SA1134 SA1405 BS_ymcB BS_yqeV BH1351 BH2372 sll0996 alr1312 yleA ZyleA ECs0699 YPO2620 STM0670 BU441 VC0962 PA3980 HI0019 PM1001 XF0906 NMB1866 NMA0590 RSc0531 HP0269 HP0285 jhp0254 jhp0270 Cj0458c Cj1006c AGc4885 AGc623 SMc01115 SMc03855 BMEI0132 BMEI1976 mlr4319 mlr5534 CC3684 RP416 RP808 RC0580 RC1246 CPn0477 TP0269 TP0754 CLUSTER 2 aq_849 TM1862 DRA0189 CAC1813 slr0082 alr1222 yliG ZyliG ECs0915 STM0852 VC2620 PA0916 PM1571 RSc1636 HP0734 jhp0671 Cj1454c BMEII0703 mlr0499 CPn0251 >COG0624 (Putative duplication confidence score 1.000) CLUSTER 1 AF0051 AF0522 AF0904 MJ0457 MJ1497 MK0128 MK1581 Ta0934m TVN1079 PH0265 PH1153 PH1288 PH1715 PAB0294 PAB0581 PAB0723 PAE2335 PAE2798 SSO0162 SSO0790 SSO1007 SSO1538 SSO2737 APE0632 APE1467 APE1917 YBR281c_2 YFR044c YJL172w SPAC24C9.08 SPBC1198.08 SPCC757.05c aq_547 TM0129 TM1666 FN0278 DR1413 DR2017 DR2025 DR2493 CAC2723 Cgl1085 Cgl2670 Cgl2768 Rv1202 Rv2141c Rv2522c MT1240 MT2199 MT2598 ML1059 ML1193 ML1288 L0115 L59867 SPy1070 SPy1542 SP0150 SP0623 SP2153 SA1572 SA1814 lin0289 lin1661 BS_argE BS_ylmB BS_ytjP BH0352 BH1059 BH2678 BH3272 BH3875 argE dapE ygeY ZargE ZdapE ZygeY ECs3334 ECs3745 ECs4886 YPO3053 YPO3928 STM2483 STM4120 BU047 BU095 VC2152 VC2645 PA1162 PA2787 PA5206 PA5390 HI0102 PM0932 PM1022 PM1117 XF0116 XF1000 NMB1530 NMA1730 RSc1302 RSc1390 RSc1641 RSc3093 RSc3273 RSp0273 RSp0487 HP0212 jhp0198 Cj1048c AGc165 AGc647 AGl2847 AGpA709 SMa1836 SMc01096 SMc02852 BMEI1827 BMEII0268 mll3297 mll6018 mll7049 mlr1185 mlr4849 mlr7167 CC0275 CC0736 CC1605 CC3239 CC3631 RP874 RC1347 CPn0980 CLUSTER 2 SSO2719 DR1154 lin0541 BS_yurH BH0761 ylbB ZylbB ECs0578 YPO3249 STM0527 PA0444 HI0588 PM0160 AGc4327 AGl3478 SMb21435 SMc01820 BMEI1643 mll1631 mll7658 mlr0967 mlr7938 CC2603 >COG0630 (Putative duplication confidence score 1.000) CLUSTER 1 AF0338 AF0659 AF0996 AF1049 VNG0823G VNG0949G MA0234 MA1299 MA3056 MA3082 MA3096 MA3975 MJ0900 MJ1287 MJ1288 Ta0559 Ta0901 Ta0904 TVN0613 TVN1012 TVN1015 PH0557 PH0650_3 PH1309 PAB0563 PAB1386 PAB1457_3 PAE0773 PAE2119 PAE2399 PAE2778 SSO0120 SSO2316 SSO2387 SSO2680 APE0695 APE1896 APE2208 XFa0015 HP0525 HP1421 jhp0474 jhp1316 AGpAbx65 AGpT14 SMa1302 BMEII0035 mlr9260 CC2423 RP292 RC0390 CLUSTER 2 VNG0218G >COG0635 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1424 TM1166 FN0560 FN0771 FN1612 DR0130 CAC1279 CAC2271 Cgl2240 Rv2388c MT2457 L0193 SPy1040 SP1409 SA1412 lin1513 BS_hemN BS_hemZ BH1152 BH1343 sll1917 all4956 yggW ZchuW ZyggW ECs3831 ECs4383 YPO0286 YPO0946 STM3104 STM4012 BU550 VC0455 VCA0909 PA0386 HI0463 PM1669 XF1507 NMB0665 NMA0864 RSc2161 HP1226 jhp1147 Cj0363c Cj0580c AGc568 SMc01147 BMEI1771 mlr4627 CC0145 RP175 RC0219 CT052 CPn0380 TP0186 BB0656 UU274 CLUSTER 2 aq_2124 sll1876 alr3126 hemN ZhemN ECs4789 YPO0021 STM4004 VC0116 PA1546 PM1833 NMB0379 NMA2108 RSc3284 HP0665 jhp0610 Cj0992c AGc2945 SMa1266 BMEI1293 BMEII0096 mll5815 mll6408 mlr6390 mlr6633 CC1411 CT746 CPn0889 >COG0638 (Putative duplication confidence score 1.000) CLUSTER 1 AF0481 AF0490 VNG0166G VNG0880G MA1779 MA3873 MTH1202 MTH686 MJ0591 MJ1237 MK0385 MK1228 Ta0612 Ta1288 TVN0304 TVN0663 PH0245 PH1402 PH1553 PAB0417 PAB1867 PAB2199 PAE0807 PAE2215 PAE3595 SSO0278 SSO0738 SSO0766 APE0507 APE0521 APE1449 YBL041w YER012w YER094c YFR050c YGL011c YGR135w YGR253c YJL001w YML092c YMR314w YOL038w YOR157c YOR362c YPR103w SPAC22D3.07 SPAC22F8.06 SPAC31A2.04c SPAC31A2.17c SPAC323.02c SPAC4A8.13c SPAC6G10.04c SPBC106.16 SPBC4C3.10c SPBC577.10 SPBC646.16 SPCC1442.06 SPCC1795.04c SPCC63.12c ECU02g0340 ECU05g0290 ECU05g1340 ECU05g1400 ECU07g1040 ECU07g1420 ECU08g0280 ECU08g1580 ECU08g1870 ECU09g0330 ECU09g0720 ECU10g0550 ECU10g1450 ECU11g1670 Rv2110c MT2170 ML1322 CLUSTER 2 Rv2109c MT2169 ML1323 >COG0645 (Putative duplication confidence score 0.500) CLUSTER 1 VNG1964a aq_1484 DR2139 DR2467 Rv2004c_2 MT2060_2 slr0207_2 alr4787_2 PA4701_2 mll6593_2 CC0920_2 CLUSTER 2 DR0609 SMc02847 >COG0651 (Putative duplication confidence score 1.000) CLUSTER 1 AF1825 VNG0560C VNG0562C VNG0563G MA4368 MA4371 MA4569 MTH1246 MJ1309 TVN1455 TVN1458 PH0941 PH1431 PH1451 PH1452 PAB0490 PAB0806 PAB1392 PAB1402 PAB1888 PAB2416 PAE1576 SSO0328_1 SSO1021 SSO1024 APE1415 TM1105 TM1211 TM1212 DR0883 Cgl0268 Cgl2674 Rv0083 Rv0086 MT0090 MT0093 SA0581 SA0810 lin2480 BS_yufD BH1316 slr2007 slr2009 all1842 hycC hyfB hyfF ZhycC ZhyfB ZhyfF ECs3344 ECs3348 ECs3579 STM2851 VCA0155 PA1056 AGc1663 AGc899 SMa1538 SMa1541 SMc00054 SMc03181 BMEII0768 RP283 RP284 RC0381 RC0382 CLUSTER 2 RP282 RC0378 >COG0657 (Putative duplication confidence score 1.000) CLUSTER 1 AF1716 MA2629 TVN0727 SSO2493 SSO2517 SSO2521 YDR428c YGR263c SPAC1039.03 SPAC4A8.06c SPAPB1A11.02 SPBPB2B2.02 TM1160 DR0133 DR0821_2 DR1485 DRA0340 DRB0033_1 CAC2917 Cgl0119 Cgl0151 Cgl0872 Cgl1142_1 Rv0217c Rv0220 Rv1076 Rv1399c Rv1400c Rv1426c Rv2284 Rv2385 Rv2485c Rv2970c Rv3084 Rv3097c_2 Rv3487c MT0227 MT0230 MT1106 MT1443 MT1444 MT1469 MT2342 MT2453 MT2559 MT3048 MT3169 MT3181_2 MT3591 ML0314 ML1243 L141530 L42784 SPy1308 SPy1718 SA0310 SA0610 SA2140 SA2323 lin2194 BH2248 BH2806 sll0644 alr0079 aes ZybaC ECs0529 YPO2007 YPO2336 STM0490 STM4032 VCA0490 PA2098 PA5384 XF1253 XF1743 RSc0439 RSc1772 RSc3312 RSp0232 RSp1108 RSp1111 RSp1429 AGc2981 AGc4503 AGpA499 SMa0259 SMc01093 SMc01650 mll0618 mll1869 mll3568 mll4497 mll5717 mll7218 mlr0240 mlr1247 mlr5045 CC0771 CC1226 CC2298 CC2313 CC3346 TP0935 CLUSTER 2 SPAC8F11.08c >COG0663 (Putative duplication confidence score 1.000) CLUSTER 1 MA1098 MA1134 MA2536 MTH1588 MJ0304 MK0112 Ta0552 Ta0881m TVN0606 TVN0980 PH1591 PAB0393 SSO0372 aq_1660 DR2089 CAC1048 Cgl0121 Rv3525c MT3625 BS_ytoA BH0211 BH3289 sll1031_1 sll1636 all0865_1 alr1024 caiE paaY yrdA Z4650 ZcaiE ECs0038 ECs4145 STM0069 STM3399 VC0058 PA0066 PA3753 PA5540 XF1984 XF2095 NMB0625 NMA0833 RSc1133 Cj0229 AGc2798 SMc04241 BMEI0736 mll0380 mlr0180 CC2643 RP516 RC0635 CLUSTER 2 MK0772_2 >COG0674 (Putative duplication confidence score 0.727) CLUSTER 1 AF0469 AF0749_2 VNG0474G_2 VNG1128G_2 MA2910 MA3075_2 MTH1033 MTH536_2 MTH704 MJ0276 MK0728 Ta0259m_2 Ta0773_2 TVN0846_2 TVN1335_2 PH1662 PH1666 PAB0346 PAB2359 PAE0939_2 PAE1559_2 PAE2736_2 SSO2815_2 APE1473_2 APE2126_2 TM0878 TM1164_2 TM1759 CAC2459_2 Rv2455c_2 MT2530_2 SA1131_2 BH2374_2 HP0589 jhp0537 Cj0536 CLUSTER 2 AF1701 AF2053 MA0032 MTH1739 MJ0267 MK0082 Ta0628m TVN0835 PH0680 PH0684 PAB1472 PAB1475 PAE1042 PAE3275 SSO1207 SSO2129 SSO2757 YFR030w_1 YJR137c_1 SPAC10F6.01c_1 SPCC584.01c_1 aq_1167 aq_1195 TM0017 FN1170_1 FN1421_1 FN1748 FN1749 CAC2229_1 CAC2499_1 L29321_1 lin0824_1 sll0741_1 alr1911_1 alr2803_1 ydbK_1 ZydbK_1 ECs2000_1 YPO2334_1 STM1651_1 VCA0530_1 HP1110 jhp1037 Cj1476c_1 TP0939_1 >COG0675 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0013C VNG0026C VNG0042G VNG0044H VNG0286C VNG2652H VNG6181H VNG6221H VNG6361G VNG6406H MA0258 MA1009 MA1041 MA1786 MA3213 MA3361 MA3720 MA4675 MJ0013 MJ0751 MJ0752 MJ0856.1 MJ0857 MJ1635 MK0605 Ta0028 Ta0029 Ta0381 Ta0382 Ta0475 Ta0564 Ta1471 Ta1472 TVN0006 TVN0043 TVN0248 TVN0323 TVN0468 TVN0712 TVN0713 TVN0714 TVN0764 TVN0770 TVN0842 TVN0903 TVN0952 TVN1131 TVN1187 TVN1222 PH0585 PH0630 PAB1452 PAB1802 PAB2077 PAE1076 PAE1827 PAE2522 PAE2770 PAE3530 SSO0008 SSO0794 SSO0797 SSO0801 SSO0842 SSO1072 SSO1182 SSO1187 SSO1216 SSO12210 SSO1316 SSO1336 SSO1341 SSO1347 SSO1348 SSO1366 SSO1368 SSO1475 SSO1498 SSO1504 SSO1521 SSO1652 SSO1659 SSO1672 SSO1681 SSO1682 SSO1829 SSO1844 SSO1916 SSO1967 SSO1974 SSO2123 SSO2124 SSO2143 SSO2144 SSO2782 SSO2785 SSO2811 SSO2944 SSO3153 SSO3172 SSO3217 SSO3256 SSO7675 SSO7710 SSO8288 SSO9268 aq_1459 aq_716 aq_aa05 TM0047 TM0135 TM0776 TM0970 TM1003 TM1026 TM1044 TM1677 TM1831 DR0178 DR0666 DR0978 DR1381 DR1593 DR1651 DR1933 DR2324 DR2424 Rv0031 Rv0606 Rv0829 Rv0922 Rv2791c Rv2885c Rv2978c Rv3827c MT0035 MT0949 MT2861 MT2953 MT3056 MT3935 slr2062 all0314 all0315 all1608 all1684 all3986 all4465 all4675 all5207 all7008 all7085 all7148 all7158 all7245 all8010 all8068 all8070 alr1157 alr1531 alr2168 alr2719 alr3372 alr4104 alr7147 alr7153 alr7228 alr7231 alr7325 alr7329 ydcM Z3664 Z5816 ECs3276 ECs5183 PSLT035 STM2599 XF0536 XF1850 HP0413 HP0438 HP0989 HP0997 HP1095 HP1534 jhp0826 BBH40 BBI41 CLUSTER 2 MJ0012m >COG0689 (Putative duplication confidence score 1.000) CLUSTER 1 AF0493 MTH683 MK0381 Ta1293 TVN0307 PH1549 PAB0420 PAE2207 SSO0735 APE1447 YGR095c YGR195w SPAC3G9.10c SPBC115.01c SPBC211.08c ECU09g0830 ECU10g0270 aq_924 FN1851_1 DR1585 Cgl2451 Rv1340 MT1381 ML1174 lin1201 BS_rph BH3068 alr0069 rph Zrph ECs4518 YPO0044 STM3734 VC0210 PA5334 HI0273 PM1876 XF1505 NMB1499 NMA1702 RSc2159 AGc571 SMc01144 BMEI1775 mlr4622 CC0152 RP628 RC0975 CLUSTER 2 YGR158c >COG0696 (Putative duplication confidence score 1.000) CLUSTER 1 VNG1887G MA2671 MA4007 ECU10g1060 CAC0712 SA0730 lin2550 BS_pgm BH3557 slr1945 all4182 gpmI ZyibO ECs4490 YPO0064 STM3704 VC0336 PA5131 HP0974 jhp0908 Cj0434 AGl2721 UU182 MYPU_4590 MPN628 MG430 CLUSTER 2 MA3365 >COG0698 (Putative duplication confidence score 0.800) CLUSTER 1 aq_1138 TM1080 FN1874 CAC0726 CAC2880 CAC2953 CAC2954 Cgl2369 Rv2465c MT2540 ML1484 SPy1707 SPy1708 SPy1922 SPy1923 SP1192 SP1193 SA1996 SA1997 lin0363 lin0498 lin2811 lin2821 BS_ywlF BH3767 ssl2153 rpiB YPO3353 PM1645 HP0574 jhp0521 Cj0925 SMb20371 SMc01613 BMEII0424 msr7277 RP299 RC0402 UU006 MYPU_6120 MPN595 MG396 CLUSTER 2 CAC2606 SPy0637 SP0319 YPO1991 STM1933 >COG0715 (Putative duplication confidence score 1.000) CLUSTER 1 AF0088 MA0065 MJ1181 MK0601 YDL244w YFL058w YJR156c YNL332w SPCC1223.02 TM0202 TM0484 FN0236 DR0268 DR1277 DR1655 CAC0106 CAC0620 CAC1400 Cgl1195 Cgl1246 Cgl1257 SP2197 SA0167 BS_ssuA BS_ytlA BS_ytlB BH1209 BH2682 sll0473 sll1080 sll1450 sll1452_2 slr0040 slr0043_2 all3333 alr0608 alr0610_2 alr2877 alr2879_2 ssuA ZycbO ECs1019 YPMT1.42 YPO2286 YPO3624 VC1369 PA0186 PA1786 PA2296 PA2309 PA2328 PA2594 PA2595 PA2596 PA2599 PA3445 PA3449 PA3513 HI0357 PM1263 RSc0381 RSc1198 RSc1338 RSc3391 RSp1383 RSp1509 AGc1281 AGc1930 AGc256 AGc3458 AGc4336 AGl1197 AGl129GM AGl1399 AGl1881gl AGl1886 AGl2760 AGl2788 AGl3061 AGl928 AGpT119 AGpT163 SMa0585 SMa2087 SMa2093 SMb20570 SMb21114 SMc01827 SMc02344 BMEI1737 BMEII0109 BMEII0797 BMEII0963 mll1256 mll1296 mll1621 mll1755 mll4559 mll6979 mll8573 mll9181 mlr2856 mlr2858 mlr6799 mlr7112 mlr7949 CC0609 CC1833 CC2633 CT854_2 CPn1012_2 CLUSTER 2 AF0640 >COG0733 (Putative duplication confidence score 1.000) CLUSTER 1 AF1995 VNG1526G VNG1528G VNG6261G MA0901 MA1518 MJ1319 PH1372 PAB1850 aq_2077 FN1944 FN1989 Cgl1001 SP0737 SA0417 lin1873 BS_yhdH BS_yocR BH0217 BH1128 BH3439 VC1669 VC2012 VC2283 HI0736 HI1690 PM0380 PM0718 NMB1707 NMB1975 NMA0470 NMA1961 HP0497 HP0498 jhp0449 jhp0450 Cj0601c Cj0934c Cj0935c CT231 CPn0290 TP0023 CLUSTER 2 SP0738 >COG0744 (Putative duplication confidence score 1.000) CLUSTER 1 TM0886 FN0525 DR0479 DR1417 CAC2301 CAP0076 Cgl0279 Cgl2930 Rv0050 Rv3682 MT0056 MT3784 ML2308 ML2688 L129183 L160485 L191431 SPy0097 SPy1649 SPy2059 SP0369 SP2010 SP2099 SA1283 SA1551 SA1691 lin2006 lin2331 BS_pbpD BS_pbpF BS_ponA BS_ywhE BH1201 BH1702 BH3229 BH3812 sll0002_2 sll1434 slr1710 all2952 all2981 alr4579 alr5324 alr5326 mrcB mtgA ZmrcB ZmtgA ECs0153 ECs4087 YPO3393 YPO3552 STM0190 STM2439 STM3326 BU200 VC0602 PA0378 PA4700 HI0831 HI1725 PM0324 PM0456 XF0884 XF1715 NMB0357 NMA2130 RSc2776 HP0597 jhp0544 Cj0508 AGc158 AGc1696 AGc4930 SMa1905 SMc00122 SMc02856 SMc03883 BMEI0271 BMEI1351 BMEI1831 mll3238 mll3783 mll7657 CC0252 CC0325 CC1516 CC3277 CLUSTER 2 VC1321 PA0788 RSc1476 >COG0753 (Putative duplication confidence score 1.000) CLUSTER 1 YDR256c YGR088w SPCC757.07c DR1998 DRA0259 Cgl0256 SA1170 lin2920 BS_katA BS_katB BS_katX BH1306 BH1980 katE ZkatE ECs2438 YPO1207 STM1318 VC1585 PA2147 PA4236 PA4613 HI0928 PM0032 NMB0216 NMA0050 RSp1581 HP0875 jhp0809 Cj1385 AGpA722 SMb20007 SMc00819 BMEII0893 mlr2101 CLUSTER 2 HP0485 jhp0437 >COG0754 (Putative duplication confidence score 1.000) CLUSTER 1 sll0023 ygiC yjfC ZygiC ZyjfC ECs3926 ECs5162 YPO0660 STM3188 STM4376 HI0929 HP0233 jhp0218 Cj0372 AGc3820 AGc3823 CC2361 CLUSTER 2 gsp_2 Zgsp_2 ECs3873_2 STM3139_2 >COG0764 (Putative duplication confidence score 1.000) CLUSTER 1 aq_056 TM0801 FN0594 DR1074 CAC3571 L0188 L160425 SPy1746 SP0424 SA1901 lin2668 BS_ycsD BS_ywpB BH1850 BH3735 sll1605 alr2271 fabZ Z1546 Z4857 ZfabZ ECs0182 ECs1286 ECs4332 YPO1055 YPO1454 STM0227 BU237_2 VC2249 PA3645 HI1062 PM1995 XF0774 XF1044 NMB0179 NMA0088 RSc0432_2 RSc1415 RSp0367_2 HP1376 jhp1290 Cj0273 AGc2558 AGc2940 SMc02092 SMc04277 BMEI0832 mll0634 CC1912 RP008 RC0009 CT532 CPn0651 CLUSTER 2 all1643_2 fabA ZfabA ECs1038 YPO1430 STM1067 VC1483 PA1610 HI1325 PM0484 XF0572 AGc246 SMc00328 BMEI1956 mll5569 CC3720 >COG0767 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1530 aq_355 Rv0167 Rv0587 Rv1964 Rv3501c MT0176 MT0616 MT2016 MT3605 ML2587 slr1045 slr1344 alr4015 yrbE ZyrbE ECs4073 YPO3574 STM3312 VC2519 PA3211 PA4455 HI1086 PM0175 XF0420 XF1303 NMB1965 NMA0486 RSc0313 RSc2961 HP1466 jhp1359 Cj1646 AGc3035 SMc00174 BMEI0965 mll0801 CC2318 CC3695 RP096 RC0129 CLUSTER 2 Rv0168 Rv0588 Rv1965 Rv3500c MT0617 MT2017 MT3604 ML2588 >COG0769 (Putative duplication confidence score 1.000) CLUSTER 1 MTH734 MK0752 aq_1747 TM0237 FN1225 DR0297 CAC2129 CAC2819 Cgl2113 Rv2158c MT2217 ML0909 L53929 SPy0388 SP1530 SA0876 lin2144 BS_murE BH2571 slr0528 slr2002_2 all1663 all3879_2 murE ZmurE ECs0089 YPO0550 STM0123 BU221 VC2406 PA4417 HI1133 PM0137 XF0793 NMB0414 NMA2071 RSc2849 HP1494 jhp1387 Cj1641 AGc3809 SMc01861 BMEI0574 mll1560 CC2559 RP597 RC0912 CT269 CPn0418 TP0933 BB0201 CLUSTER 2 MK0926 CAC0962 Cgl0247 Rv3712 MT3815 ML2326 L114717 SPy1035 SP1589 SA1708 slr0938 alr2717 >COG0772 (Putative duplication confidence score 1.000) CLUSTER 1 aq_025 aq_1139 TM0233 TM0839 FN0042 FN1027 DR2497 CAC0505 CAC1251 CAC2126 Cgl0044 Cgl2109 Rv0017c Rv2154c MT0020 MT2213 ML0019 ML0913 L107499 L115706 L62179 SPy0609 SP0803 SP1067 SA0962 SA1888 lin0441 lin1059 lin2521 lin2522 lin2834 lin2835 BS_spoVE BS_ylaO BS_ywcF BH2566 BH3275 BH3276 BH3360 slr1267 all0154 alr0653 ftsW mrdB ZftsW ZmrdB ECs0093 ECs0672 YPO0554 YPO2603 STM0127 STM0639 BU217 VC0949 VC2402 PA4002 PA4413 HI0031 HI1137 PM0141 PM1925 XF0796 XF1313 NMB0421 NMA2063 RSc0063 RSc2845 HP0743 HP1560 jhp0680 jhp1468 Cj1038 Cj1282 AGc3801 SMc01865 BMEI0578 mll1555 CC1547 CC2552 RP280 RP411 RC0376 RC0561 CT726 CT760 CPn0867 CPn0903 TP0387 TP0501 BB0302 BB0719 CLUSTER 2 CC3235 >COG0773 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1360 TM0231 FN1456 DR0627 CAC3225 Cgl2107 Rv2152c MT2211 ML0915 L101678 SPy0345 SP1521 SA1561 lin1646 BS_murC BH3248 slr1423 alr5065 murC ZmurC ECs0095 YPO0556 STM0129 BU215 VC2400 PA4411 HI1139 PM0143 XF0798 NMB0423 NMA2061 RSc2843 HP0623 jhp0567 Cj1054c AGc3796 SMc01867 BMEI0580 mll1553 CC2546 RP247 RC0331 CT762_1 CPn0905_1 TP0341 BB0817 CLUSTER 2 mpl ZyjfG ECs5210 YPO3519 STM4416 VC2542 PA4020 HI0121 PM0929 XF0276 NMB1145 NMB1183 NMA1356 RSc2782 >COG0775 (Putative duplication confidence score 0.867) CLUSTER 1 MA3492 MA3560_2 TM1129 FN1015 DR1451 DR1664 CAC2117 Cgl2742 Rv0091 Rv2293c MT0100 MT2350 L132777 SPy0447 SP0991 SA1427 lin1529 BS_yrrU BH1279 BH2690 BH3238 pfs Zpfs ECs0163 YPO3384 STM0207 BU210 VC2379 HI1216 PM0194 NMB0767 NMA0978 RSc3374 HP0089 jhp0082 Cj0117 AGc482 SMc00395 BMEII0888 mlr6947 CC2266 CPn0232 TP0170 BB0375 BB0588 BBE07 BBI06 UU470 MYPU_3360 CLUSTER 2 Cgl0095 amn Zamn ECs2779 YPO2288 STM2009 PA3970 RSp0214 AGc1849 SMc02386 BMEI1318 mll7714 CC0264 CT751 CPn0894 >COG0777 (Putative duplication confidence score 1.000) CLUSTER 1 aq_445 FN0408 DR1215 CAC3569 Cgl0808_1 Rv0904c_1 MT0927_1 L0180 SPy1744 SP0426 SA1523 lin1608 BS_yttI BH3166 sll0336 all2364 accD ZaccD ECs3200 YPO2768 STM2366 VC1000 PA3112 HI1260 PM0636 XF1467 NMB0679 NMA0880 RSc1980 HP0950 jhp0884 Cj0127c AGc32 SMc02764 BMEI2020 mlr5075 CC3542 CT293 CPn0058 CLUSTER 2 PA0211 >COG0782 (Putative duplication confidence score 1.000) CLUSTER 1 TM1706 DR1162 DR1970 DR2375 CAC1965 CAC2430 CAC3198 Cgl0961 Rv1080c Rv3788 MT1111 MT3896 ML2393 L0140 SPy0349 SP1517 SA1438 lin1531 BS_greA BH1276 greA greBm rnk ZgreA ZgreB Zrnk ECs0649 ECs4060 ECs4248 YPO0135 YPO3505 YPO3695 STM0616 STM3299 STM3503 BU384 VC0634 VC2715 VCA0607 PA2859 PA4755 PA5274 HI0569 HI1331 PM0715 PM1450 XF1108 NMB0689 NMB1430 NMA0891 NMA1643 RSc1522 RSc2152 RSc2636 HP0866 jhp0800 Cj0287c AGc3965 AGl2534 SMa0149 SMa0229 SMa0232 SMc00347 SMc01218 BMEI0508 BMEI1377 BMEII0657 mll2568 mll3994 mlr7618 CC2202 CC2848 RP861 RC1332 CT636_2 CPn0741_2 TP0019 BB0132_2 UU304 MYPU_5530 MPN401 MG282 CLUSTER 2 mll3993 >COG0786 (Putative duplication confidence score 0.500) CLUSTER 1 FN0205 FN0793 FN1801 SA2135 slr1145 gltS ZgltS ECs4529 YPO0035 STM3746 VCA0041 PA3176 HI1530 NMB0085 NMA0183 HP1506 jhp1399 CLUSTER 2 Cgl2722 slr0625 >COG0804 (Putative duplication confidence score 0.500) CLUSTER 1 SPAC1952.11c_3 DRA0318 Cgl0086 Rv1850 MT1898 SA2084 BS_ureC BH0254 sll1750 alr3670 ZureC ZureC.2 ECs1324 PA4868 HI0539 RSc2032 HP0072 jhp0067 AGc4357 SMc01837 BMEI1652 mll4940 UU432 CLUSTER 2 YPO2667 BMEI0647 >COG0811 (Putative duplication confidence score 0.500) CLUSTER 1 MA0344 MA4426 MA4641 MTH671 MK0066 PA1924 CLUSTER 2 MTH1022 aq_1757 aq_1988 FN1312 FN1834 DR0456 sll0477 sll1404 slr0677 all5047 alr0643 alr4587 exbB tolQ ZexbB ZtolQ ECs0772 ECs3890 YPO0682 YPO1121 STM0745 STM3159 VC1546 VC1547_2 VC1839 VCA0911 PA0198 PA0693_2 PA0969 PA2983 HI0253 HI0385 PM0970 PM1186 XF0010 XF1079 XF1900 NMB1729 NMA1984 RSc0732 RSc1964 RSc2528 HP1130 HP1339 HP1445 jhp1058 jhp1258 jhp1338 Cj0109 Cj0179 Cj1628 AGc264 AGl2236 SMc02085 SMc03958 BMEI0336 BMEI0365 mll3891 mll4168 CC2336 CC3233 RP309 RC0422 CT596 CPn0785 >COG0814 (Putative duplication confidence score 0.727) CLUSTER 1 YBL089w YEL064c YER119c YIL088c YJR001w YKL146w YNL101w SPAC3H1.09c SPBC1685.07c ECU04g1190 ECU05g0160 ECU05g0580 ECU09g1190 ECU11g1740 Cgl0474 mtr tnaB tyrP Zmtr ZtnaB ZtyrP ECs2615 ECs4042 ECs4646 YPO1209 YPO1285 STM1937 STM3279 VCA0160 VCA0772 PA1916 PA3766 PA5434 HI0287 HI0477 HI0528 PM0732 PM0810 PM1192 PM1419 NMB2031 NMA0409 CT817 CT818 CPn0969 CPn0970 CLUSTER 2 sdaC tdcC yhaO yhjV yqeG Z4165 ZsdaC ZtdcC ZyhaO ZyhjV ECs3656 ECs3702 ECs3991 ECs3996 ECs4419 YPO0277 YPO1321 STM2970 STM3022 STM3239 STM3243 STM3625 VC1301 VC1658 HI0289 PM0037 HP0133 jhp0121 Cj1625c >COG0820 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1528 aq_416 TM1715 FN0526 DR0936 CAC1726 Cgl1973 Rv2879c Rv2880c MT2947 L184159 SPy1533 SP0768 SA1061 lin0484 BS_yloN BH2506 sll0098 all0355 yfgB ZyfgB ECs3379 YPO2882 STM2525 BU286 VC0757 PA1839 PA3806 HI0365 PM2007 XF0459 NMB1308 NMA1522 RSc1212 HP1428 jhp1325 Cj1713 AGc4846 SMc03831 BMEI1867 mlr4359 CC0134 TP0068 UU214 CLUSTER 2 TM0136 CAC1190 >COG0826 (Putative duplication confidence score 1.000) CLUSTER 1 MA0538 MA1709 MA4661 MTH1763 MTH645 MJ0090 MJ1657 MK0019 MK0904 MK0906 SSO1759 SSO2015 aq_1015 FN1826 FN1931 DR2130 CAC1687 CAC2341 CAC2974 L52207 L54059 SPy0590 SPy0591 SP0801 SP1427 SP1429 SA1440 SA1441 lin0959 lin0960 BS_yrrN BS_yrrO BH1273 BH1274 all1741 ydcP yegQ yhbU ZydcP ZyegQ ZyhbU ECs2039 ECs2889 ECs4039 YPO2855 YPO3479 STM1604 STM2136 STM3274 VC0652 VC0717 PA3913 PA5440 HI0419 PM0233 NMB1664 NMA1923 RSp0970 HP0169 jhp0155 Cj0701 AGl935 SMa1291 BMEII0959 CLUSTER 2 yhbV ZyhbV ECs4040 YPO3480 STM3275 VC0651 PA3912 RSp0969 AGl934 SMa1292 BMEII0960 >COG0833 (Putative duplication confidence score 1.000) CLUSTER 1 YBR068c YBR069c YBR132c YCL025c YDR046c YDR508c YEL063c YFL055w YGR191w YKR039w YLL061w YNL268w YNL270c YOL020w YOR348c YPL265w YPL274w SPAC1039.09 SPAC869.10c SPAC869.11 SPAP7G5.06 SPBC1652.02 SPBC19F8.06c SPBC359.01 SPBC359.03c SPBPB2B2.01 SPCC777.04 SPCC965.11c SPCPB1C11.02 CAC3164 CAC3347 L169610 L59950 SA1169 SA1505 lin0791 BS_hutM BS_rocC BS_rocE BS_ybgF lysP ykfD ZlysP ECs3048 YPO1309 STM2200 STM2357 PA4628 PA4981 RSc1757 RSc1758 HP1017 jhp0406 CLUSTER 2 YDR160w >COG0836 (Putative duplication confidence score 1.000) CLUSTER 1 AF1097_1 VNG2159Gm MA3781_1 PH0925_1 PAB0818_1 aq_589_1 TM1033 DRA0032 CAC2968 CAC3058 CAC3072 sll1370 alr0188 cpsB_1 ZcpsB_1 ZmanC_1 ECs2836_1 ECs2854_1 YPO3099_1 STM2084_1 STM2105_1 VC0241_1 PA2232_1 PA3551_1 PA5452_1 XF0259_1 HP0043_1 jhp0037_1 AGl2939_1 SMb21082_1 BMEI1395_1 BMEII0900_1 mlr5802_1 mlr7607_1 CC3618 RC1039_2 CLUSTER 2 RC1040 >COG0841 (Putative duplication confidence score 1.000) CLUSTER 1 MA0141 aq_786 TM0372 FN0474 FN0515 FN1275 DR0740 CAC0370 SA2056 BS_yerP BH3816 sll0142 slr0369 slr0454 slr2131 all3143 alr1656 alr4267 alr5294 acrB acrD acrF yegN yegO yhiV Z2507 Z2508 ZacrB ZacrD ZacrF.1 ZacrF.2 ZyegN ZyegO ZyhiV ECs0515 ECs1864 ECs2883 ECs2884 ECs3332 ECs4138 ECs4139 ECs4394 YPO0421 YPO1001 YPO2848 YPO2849 YPO3043 YPO3133 YPO3482 STM0351 STM0475 STM2127 STM2128 STM2481 STM3391 VC0164 VC0629 VC0914 VC1673 VC1757 PA0158 PA0426 PA1436 PA2018 PA2494 PA2526 PA2527 PA3522 PA3676 PA4207 PA4375 PA4598 HI0895 PM1132 XF0243 XF2083 XF2094 XF2385 XF2386 NMB1715 NMA1969 RSc0010 RSc1654 RSc3205 RSp0312 RSp0670_2 RSp0818 RSp1113 RSp1198 RSp1199 RSp1458 RSp1597 HP0607 jhp0554 Cj0366c Cj1033 AGc3721 AGc4340 AGc4508 AGc4621 AGl1281 AGl2075 AGl3088 AGl3217 AGl494 AGpA548 SMa0875 SMa1662 SMa1884 SMb20345 SMb21498 SMc01095 SMc01457 SMc01829 SMc02867 SMc03971 BMEI0893 BMEI1629 BMEI1645 BMEII0382 BMEII0473 BMEII0915 BMEII0916 mll1426 mll3832 mll5518 mll5779 mll6730 mll7357 mlr2404 mlr3285 mlr3649 mlr7298 CC0807 CC1204 CC1788 CC3120 CC3197 RP170 RC0211 RC0564 RC0565 RC0566 RC0567 RC0568 RC0569 BB0140 CLUSTER 2 aq_695 VCA0638 >COG0843 (Putative duplication confidence score 1.000) CLUSTER 1 VNG0657G PAE1337_1 SSO2973_1 APE0793_1 Q0045 Q0065 Q0070 aq_2191 DR2620_1 Cgl2472 Rv3043c MT3128 ML1728 SA0912 lin0014 BS_ctaD BS_qoxB BH2065 BH2614 slr1137 slr2082 alr0951 alr2515 alr2732 cyoB ZcyoB ECs0485 YPO3165 STM0442 BU471 PA0106 PA1318 XF1389 RSc0363 RSc1859 RSc2916 RSp1565 AGc1399 AGc227 SMb21370 SMb21488 SMc00010 SMc01983 BMEI1465 BMEI1900 mll9630 mlr1041 mlr6847 mlr7491 CC1772 CC3406 RP405 RC0553 CLUSTER 2 VNG2193Gm PAE1357 SSO0044 SSO2657 APE1623 aq_2192 BH0739 >COG0849 (Putative duplication confidence score 1.000) CLUSTER 1 MK0451 aq_523 TM0835 FN1452 DR0630 CAC1692 L0207 SPy1521 SP1667 SA1028 lin2139 BS_ftsA BH2559 ftsA ZftsA ECs0098 YPO0559 STM0132 BU213 VC2398 PA4408 HI1142 PM0146 XF0801 NMB0426 NMA2058 RSc2840 HP0978 jhp0912 Cj0695 AGc3785 SMc01873 BMEI0584 mll1549 CC2541 RP251 RC0335 TP0389 BB0300 CLUSTER 2 TM1277 CAC1013 BH3243 >COG0861 (Putative duplication confidence score 0.588) CLUSTER 1 DR1187 DRB0131 CAC1039 CAC1415 SA0878 lin0990 lin0991 BS_yceF BS_yjbE BS_ykoY BH2553 BH2860 sll1022 all3403 yegH_1 ygdQ yoaE_1 Z4150 ZyegH_1 ZyoaE_1 ECs2525_1 ECs2868_1 ECs3689 YPO1527_1 YPO1759_1 STM1828_1 STM2119_1 STM3006 BU323_1 PA1170 PA1331_1 PA5250 PA5469 HI0056 PM1066 NMB1485_1 NMA1694_1 RSc0556 RSc0949 RSp1172_1 HP1343 jhp1262 Cj0186c AGc3584 AGl1024_1 AGl786 SMc03171 SMc04175 BMEI0317 BMEI0671_1 mll3952 mlr0496 CC0347 CC1237 CLUSTER 2 Cgl1921 Rv2723 MT2795 ygjT ZterC ZterC.2 ZygjT ECs1354 ECs3970 YPO0297 STM3224 VCA0546 PA2549 XF0406 NMB0012 NMA0259 AGc3415 CC3682 RP786 RC1219 >COG1001 (Putative duplication confidence score 1.000) CLUSTER 1 AF0240 MA2310 MTH866 MJ1459 MK0829 DRA0270 CAC0887 lin1853 BS_adeC BH0640 yicP ZyicP ECs4602 AGc4165 AGl883 SMa1715 SMa1718 SMb21278 SMc01533 BMEII0627 mlr0157 BBH33 BBK17 CLUSTER 2 BS_yerA BH0637 >COG1009 (Putative duplication confidence score 1.000) CLUSTER 1 AF1826 VNG0646G MA1504 MA4572_1 Ta0961 TVN1106 PAB1391 PAE1568 SSO0328_2 APE1411 aq_1320 aq_1379 aq_866 DR0880_1 DR1494 Cgl0270_1 Cgl2672_1 Rv3156 MT3244 SA0411 SA0578_1 SA0813_1 lin2477_1 BS_ndhF BS_shaA_1 BH1319_1 sll0026 sll1732 slr0844 alr0869 alr3956 alr4156 hyfD nuoL ZhyfD ZnuoL ECs3162 ECs3346 YPO2545 STM2318 BU164 VC1581 VCA0157_1 PA1054_1 PA2647 XF0316 NMB0257 NMA0002 RSc2051 HP1271 jhp1192 Cj1568c AGc1658_1 AGc2360 AGc903_1 SMc00051_1 SMc01925 SMc03179_1 BMEI1147 BMEII0770_1 mll1355 CC1939 RP792 RC1226 CLUSTER 2 TVN1107 >COG1012 (Putative duplication confidence score 0.923) CLUSTER 1 VNG0771G VNG0808G VNG0937G VNG2513G MA0705 MA1355 MA2860 MA4079 MTH978 MJ1411 MK1108 Ta0220 Ta0439 Ta0603 Ta0809 TVN0397 TVN0653 TVN1021 TVN1054 TVN1283 TVN1374 PAE2480 SSO1218 SSO1629 SSO1842 SSO3117 SSO3194 APE0163 APE0807 APE1786 YBR006w YER073w YHR037w YHR039c YMR110c YMR169c YMR170c YOR374w YPL061w SPAC1002.12c SPAC139.05 SPAC922.07c SPAC9E9.09c SPBC21C3.15c SPBC24C6.04 SPCC550.10 aq_186 FN0454 DR0813 DR2381_1 DRA0003 DRA0030 DRA0126 DRA0220 DRA0343 DRA0348 CAC3657 Cgl0050 Cgl0099_2 Cgl0160 Cgl0447 Cgl0473 Cgl0530 Cgl0532 Cgl2416 Cgl2615 Cgl2656 Cgl2736 Rv0147 Rv0223c Rv0234c Rv0458 Rv0753c Rv0768 Rv1187 Rv1731 Rv2858c Rv3293 MT0155 MT0233 MT0245 MT0474 MT0777 MT0792 MT1224 MT1772 MT2926 MT3392 ML2573 ML2639 SPy1067 SPy1371 SP1119 SA0162 SA1736 SA1924 SA2341 SA2406 lin0401 lin0913 BS_aldX BS_aldY BS_dhaS BS_gbsA BS_iolA BS_rocA BS_ycbD BS_ycgN BS_ycnH BS_yfmT BS_ywdH BH0203 BH0539 BH0681 BH0865 BH0995 BH1005 BH1738 BH2010 BH2237 BH2312 BH2737 BH3316 BH3940 sll1561_2 slr0091 slr0370 all3556 all5022 alr0540_2 alr3672 alr3771 aldA aldB aldH astD betB feaB gabD maoC_1 ydcW yneI Z2275 Z2778 ZaldA ZaldB ZaldH ZbetB ZgabD ZyneI ECs0358 ECs1877 ECs2021 ECs2048 ECs2132 ECs2452 ECs3522 ECs4464 YPO1166 YPO1290 YPO1763 YPO1964 YPO2577 STM1102 STM1305 STM1524 STM1597 STM2791 STM3129 STM3680 STM4421 STM4519 VC0819 VC1745 VC1819 VC2616 VCA1067 PA0130 PA0219 PA0265 PA0366 PA0747 PA0898 PA1027 PA1253 PA1984 PA2125 PA2217 PA2323 PA3504 PA3570 PA4022 PA4073 PA4123 PA4189 PA4899 PA5312 PA5373 PM1530 PM1536 NMB1353 NMB1488 NMB1968 NMA0480 NMA1565 NMA1696 RSc0028 RSc0161 RSc1456 RSc2110 RSc2350 RSc2536 RSc3128 RSp0226 RSp0229 RSp0650 RSp0827 RSp0890 RSp1055 RSp1591 RSp1611 HP0056_2 jhp0048_2 Cj0489 Cj0490 Cj1503c_2 AGc1515 AGc351 AGc3880 AGc4041 AGl1010GM AGl1228 AGl1241 AGl1402 AGl1790 AGl1806 AGl241 AGl2660 AGl2838 AGl2842 AGl3116 AGl75 AGpA197 AGpA283 AGpA320 SMa0050 SMa0052 SMa0220 SMa0260 SMa0796 SMa0805 SMa1415 SMa1731 SMa1844 SMa1848 SMa2213 SMb20262 SMb20378 SMb20424 SMb20891 SMb21185 SMb21301 SMb21539 SMb21635_1 SMc00094 SMc00781 SMc01588 SMc01656 SMc01971 SMc02689 SMc02780 SMc04385 SMc04397 BMEI0024 BMEI0219 BMEI0386 BMEI1382 BMEI1559 BMEI1560 BMEI1740 BMEI1747 BMEII0124 BMEII0125 BMEII0135 BMEII0140 BMEII0141 BMEII0142 BMEII0225 BMEII0241 BMEII0242 BMEII0282 BMEII0388 BMEII0608 BMEII0869 mll1015 mll1168 mll2219 mll2319 mll2867 mll3072 mll3987 mll4783 mll5719 mll5809 mll6142 mll6153 mll6639 mll7043 mll7045 mll7128 mll7197 mll7608 mlr3049 mlr4051 mlr4198 mlr5236 mlr5385 mlr6098 mlr6969 msl6152 msl8688 CC0419 CC0582 CC0822 CC1216 CC1302 CC1607 CC1849 CC2274 CC2397 CC2402 CC2791 CC3140 CC3141 CC3580 RC0621 UU362 CLUSTER 2 FN0084 CAP0035_1 CAP0162_1 L13145_1 SP2026_1 SA0143_1 lin1129 lin1143 lin1675_1 adhE_1 eutE ZadhE_1 ZeutE ECs1741_1 ECs3317 YPO2180_1 STM1749_1 STM2051 STM2463 VC2033_1 PM1453_1 >COG1015 (Putative duplication confidence score 1.000) CLUSTER 1 TM0167 DR2135 CAC2065 L154925 SPy0890 SP0829 SA0134 lin2068 BS_drm BH1530 deoB ZdeoB ECs5342 YPO0439 STM4569 BU542 VC2348 HP1179 jhp1105 AGc219 SMc04119 mll5587 MYPU_2770 CLUSTER 2 BH0592 yhfW >COG1018 (Putative duplication confidence score 0.812) CLUSTER 1 VNG0475C YGR234w_2 SPAC869.02c_2 FN0100 DRA0243_2 Cgl2333 Cgl2778_2 Rv2776c Rv3230c Rv3554_2 Rv3571 MT2846 MT3327 MT3658_2 MT3676 SA0231_2 BS_hmp_2 BH1058_2 hmp_2 paaE ybjV yeaX Z1106 ZhmpA_2 ZyeaX ECs0958 ECs2512 ECs3418_2 YPO1359 YPO2492 YPO2908_2 STM0936 STM2556_2 VCA0183_2 VCA0924_2 PA2664_2 PA3498 PA4889 PA4905 PA5411 XF0053_2 RSc3398_2 RSp0063 RSp0223 RSp0608 AGc1321 SMa0752 SMa1191_2 SMa1500_2 SMa1735 SMa2117_2 SMb21636 SMc00981 SMc04151 BMEI0548 mll5100 mll6619_2 mlr7322 CC2394 CLUSTER 2 fpr Zfpr ECs4849 YPO0088 STM4084 BU581 PA3397 PA4615 XF1889 NMB1044 NMB1450 NMA1442 NMA1664 RSc1305 AGc2692 SMc02122 BMEI1591 mll4785 CC3208 >COG1024 (Putative duplication confidence score 1.000) CLUSTER 1 AF0017_2 AF0285_2 AF0435 AF0685 AF0963 AF1122_2 AF1641 AF2273_2 AF2429 VNG0428G VNG1313G_2 VNG2032Gm Ta0061 Ta0121 Ta0291_2 Ta0440 Ta1232 TVN0017 TVN0198 TVN0363 TVN0915 TVN1310_2 PAE1383_2 PAE1650 PAE2479 SSO0050 SSO0654 SSO1311 SSO2017 SSO2514_2 SSO2535 SSO2623 SSO2624 APE0056 APE0591 APE1484_2 YDR036c_1 YLR284c YOR180c SPBC2D10.09 aq_1156_2 FN0271 FN1020 DR0114 DR0184 DR1151 DR1487_1 DR2477_2 DR2510 CAC2012 CAC2016 CAC2712 Cgl0895 Rv0222 Rv0456c Rv0632c Rv0673 Rv0675 Rv0860_1 Rv0905 Rv0971c Rv1070c Rv1071c Rv1136 Rv1141c Rv1142c Rv1472 Rv1935c Rv2486 Rv2679 Rv2831 Rv3039c Rv3373 Rv3374 Rv3516 Rv3550 Rv3774 MT0232 MT0472 MT0660 MT0702 MT0704 MT0883_1 MT0928 MT0999.1 MT1100 MT1101 MT1169.1 MT1174 MT1175 MT1518 MT1985 MT2560 MT2753 MT2897 MT3124 MT3617 MT3654 MT3883 ML0120 ML1241 ML1724 ML2118 ML2161_1 ML2401 ML2402 ML2498 SPy1758 SP0415 SA0224_2 BS_pksH BS_pksI BS_yhaR BS_yngF BS_ysiB BS_yusL_2 BH0201 BH0202 BH0207 BH1135 BH1849 BH1996 BH2582 BH3101 BH3488_2 BH3824 alr4455 caiD fadB_1 paaG ydbS yfcX_1 ygfG Z3604_1 ZcaiD ZfadB_1 ZygfG ECs0039 ECs3224_1 ECs3789 ECs4774_1 YPO1458 YPO1459 YPO2747_1 YPO3766_1 STM0070 STM2388_1 STM3983_1 VC1047_1 VC2758_1 PA0744 PA0745 PA1021 PA1240 PA1629 PA1737_1 PA1748 PA1821 PA2013 PA2767 PA2841 PA2890 PA3014_1 PA3426 PA3591 PA4330 PA4980 XF1115 RSc0267 RSc0304 RSc0474_2 RSc0476 RSc1298 RSc1759_1 RSc2014 RSc2872 RSc2873 RSp0035 RSp0225 RSp0647 RSp0648 RSp0671 AGc1329 AGc2617 AGc562 AGc888_1 AGl2647 AGl2700 SMa1408 SMb20752 SMb21126 SMb21633 SMc00976 SMc01153 SMc01641 SMc01669 SMc01806 SMc02227_1 SMc04398 BMEI0022 BMEI0023 BMEI1196 BMEI1522 BMEI1927 BMEI1945 BMEII0214 BMEII0497_1 BMEII1021 mll1009 mll4199_1 mll5431 mll5584 mll6015 mll6870 mll8753 mlr1841 mlr3048 mlr5044 mlr5629_1 mlr5639 mlr6976 mlr7453 mlr8134 mlr8392 mlr8461 CC0006 CC0076_1 CC0353 CC0397 CC0947 CC1352 CC1723 CC1813_1 CC1814 CC1851 CC2169 CC2401 CC2575 CC3084 CC3189_1 RP560_2 RC0836 RC0837 RC0838 CLUSTER 2 BMEI1928 >COG1026 (Putative duplication confidence score 1.000) CLUSTER 1 YDR430c SPBC119.17 DR0617 CAC1654 CAC3006 CT824 CPn0981 TP0025 BB0228 CLUSTER 2 YOL098c SPAC3H1.02c >COG1028 (Putative duplication confidence score 1.000) CLUSTER 1 AF1207 VNG0364G VNG0479G VNG1341G VNG1540G VNG1748C VNG2158G VNG2632G MA0107 MA0415 MA0479 MA1321 MA2686 MA2687 Ta0191 Ta0205 Ta0251 Ta0441 Ta0481_2 Ta0672 Ta0747 Ta0754 Ta0822 Ta0913 TVN0075 TVN0448_2 TVN0711 TVN1059 TVN1344 TVN1406 PH1809 PH1901 PAB0245 PAB1085 PAB2177 PAE0025 PAE0797 PAE1589 PAE2089 PAE2832 SSO0975 SSO1542 SSO2205 SSO2276 SSO2289 SSO2500 SSO2664 SSO3004 SSO3114 APE0912 APE1361 APE2503 YBR265w YDL114w YIL124w YIR035c YIR036c YKL055c YKL071w YKL107w YKR009c_1 YLR100w YLR426w YNL181w YNL202w YOR246c YPL033c SPAC1348.09 SPAC19A8.06 SPAC22A12.17c SPAC23D3.11 SPAC3G9.02 SPAC4H3.08 SPAC8E11.10 SPAC922.06 SPAC977.08 SPBC16H5.14c SPBC1709.07 SPBC30D10.05c SPCC1450.15_1 SPCC162.03 SPCC1739.08c SPCC24B10.20 SPCC663.06c SPCC663.08c SPCC663.09c SPCC736.13 ECU10g0560 ECU11g1070 aq_1010 aq_1240 aq_1716 TM0019 TM0297 TM0325 TM0441 TM1169 TM1724 FN0216 FN0494 FN1687 DR0088 DR0113 DR0411 DR0730 DR0822 DR1467 DR1620 DR1700_2 DR1938 DR1943 DR2595 DRA0195 DRA0200 DRA0364 DRB0036 DRB0080 CAC0361 CAC1331 CAC1423 CAC1576 CAC2607 CAC2626 CAC3335 CAC3462 CAC3484 CAC3574 Cgl0190 Cgl0286 Cgl0321 Cgl0536 Cgl0699 Cgl1008 Cgl1009 Cgl1450 Cgl2083 Cgl2355 Cgl2390 Cgl2619 Cgl2992 Rv0068 Rv0148 Rv0242c Rv0303 Rv0439c Rv0547c Rv0687 Rv0765c Rv0769 Rv0851c Rv0927c Rv0945 Rv1050 Rv1144 Rv1245c Rv1350 Rv1483 Rv1543 Rv1714 Rv1856c Rv1865c Rv1882c Rv1928c Rv1941 Rv2002 Rv2073c Rv2129c Rv2214c_2 Rv2263 Rv2750 Rv2766c Rv2857c Rv3057c Rv3085 Rv3174 Rv3224 Rv3391_2 Rv3485c Rv3502c Rv3530c Rv3548c Rv3549c Rv3559c Rv3791 MT0074 MT0156 MT0256 MT0316 MT0455 MT0572 MT0715 MT0789 MT0793 MT0874 MT0954 MT0971 MT1080 MT1177 MT1283 MT1393 MT1530 MT1595 MT1753.1 MT1904 MT1914 MT1931 MT1991 MT2058 MT2133 MT2187 MT2270_2 MT2323 MT2820 MT2836 MT2925 MT3143 MT3170 MT3263 MT3321 MT3498_2 MT3589 MT3606 MT3633 MT3652 MT3653 MT3664 MT3899 ML0108 ML0315 ML0862_2 ML1094 ML1740 ML1807 ML2059 ML2565 L0185 L118271 L121175 L142816 L143350 L1530 L172964 L27694 L77482 SPy0440 SPy0636 SPy1640 SPy1749 SP0320 SP0421 SP0793 SA0122 SA1074 SA1123 SA2119 SA2260 SA2365 lin0362 lin0674 lin1431 lin1796 lin1921 lin1944 lin2278 lin2948 BS_dhbA BS_fabG BS_gdh BS_kduD BS_ycdF BS_ydaD BS_yfhR BS_yhdF BS_yhxC BS_yhxD BS_yjdA BS_yjmF BS_ykuF BS_ykvO BS_ymfI BS_yoxD BS_ytkK BS_yueD BS_yusR BS_yusS BS_yusZ BS_yuxG_2 BS_yvaG BS_yvrD BS_ywfD BS_ywfH BS_yxbG BS_yxjF BS_yxnA BH0316 BH0410 BH0506 BH0707 BH0800 BH0932 BH0938 BH1067 BH1510 BH1511 BH1550_2 BH1842 BH1843 BH2144 BH2167 BH2210 BH2391 BH2491 BH3182 BH3896 sll0330 sll1308 sll1704 sll1709 sll1825 slr0506 slr0886 slr1208_2 slr1994 slr2124 all0352 all0968 all1418 all1420 all1743 all1884 all2963 all3805 all3836 alr0430 alr1722 alr1894 alr2920 alr3252 alr3897 alr4456 alr5182 alr5286 alr5358 entA fabG hcaB hdhA idnO kduD srlD ucpA ybbO yciK ydgB ygcW ygfF yjgI yohE yohF yqhB Z1533 Z1545 Z4865 Z5618 ZentA ZfabG ZhcaB ZhdhA ZkduD ZsrlD ZucpA ZybbO ZyciK ZydgB ZygcW ZyghA ZyjgI ZyohF ECs0556 ECs0635 ECs1275 ECs1285 ECs1471 ECs1843 ECs2312 ECs2327 ECs3024 ECs3297 ECs3407 ECs3561 ECs3630 ECs3699 ECs3887 ECs4340 ECs5003 ECs5226 YPO0839 YPO1287 YPO1452 YPO1456 YPO1460 YPO1565 YPO1599 YPO1724 YPO1811_2 YPO1993 YPO2215 YPO2539 YPO3081 YPO3199 YPO3351 STM0505 STM0598 STM1195 STM1675 STM1717 STM2171 STM2445 STM2835 STM3017 STM3157 STM4483 BU351 VC0774 VC0979 VC1059 VC1119 VC1591 VC1815 VC2021 VC2047 VCA0301 VCA0691 VCA1108 PA0117 PA0182 PA1023 PA1066 PA1330 PA1344 PA1379 PA1470 PA1537 PA1649 PA1827 PA1828 PA2003 PA2099 PA2142 PA2515 PA2554 PA2887 PA2892 PA2918 PA2967 PA3106 PA3128 PA3173 PA3277 PA3324_2 PA3330 PA3387 PA3427 PA3437 PA3507 PA3511 PA3883 PA3957 PA4079 PA4089 PA4098 PA4148 PA4162 PA4389 PA4786 PA5031 PA5150 PA5521 PA5524 HI0048 HI0155 PM1916 PM1968 XF0173 XF0319 XF0671 XF0913 XF1457 XF1726 XF1741 XF2082 XF2269 XF2716 NMB1127 NMB1165 NMB1702 NMB1921 NMA0533 NMA1336 RSc0156 RSc0171 RSc0215 RSc0275 RSc0284 RSc0435 RSc0536 RSc1029 RSc1052 RSc1568 RSc1572 RSc1633 RSc1730 RSc1763 RSc1769 RSc1838 RSc2147 RSc2186 RSc2351 RSc2504 RSc2534 RSc2597 RSc2753 RSc3138 RSc3209 RSc3331 RSp0033 RSp0230 RSp0305 RSp0359 RSp0446 RSp0589 RSp0697 RSp0947 RSp1059 RSp1123 HP0561 HP0890 HP1014 jhp0409 jhp0508 jhp0823 Cj0435 Cj0485 Cj0807 Cj1332 AGc1273 AGc1817 AGc1984 AGc2026 AGc2091 AGc2317 AGc2465 AGc2598 AGc2613 AGc3482 AGc3496 AGc3699 AGc4198 AGc4386 AGc4705 AGc4837 AGc5024 AGl1000 AGl1073 AGl117 AGl126 AGl1444 AGl1541 AGl2039 AGl2341 AGl2470 AGl2601 AGl2690_2 AGl28 AGl2975 AGl3035 AGl3292 AGl3337 AGl3471 AGl3508 AGl3556 AGl43 AGl509 AGl561 AGl595 AGl807 AGl91 AGpA178 AGpA214 AGpA252 AGpA258 AGpA293 AGpA300 AGpA355 AGpA398 AGpA417 AGpA564 AGpA642 AGpA687 AGpA801 AGpT126 AGpT46 SMa0059 SMa0074 SMa0187 SMa0326 SMa0329 SMa0335 SMa0339 SMa0389 SMa0513 SMa0719 SMa0854 SMa0959 SMa1367 SMa1398 SMa1452 SMa1629 SMa1757 SMa1779 SMa1967 SMa2019 SMa2165 SMb20073 SMb20076 SMb20210 SMb20409 SMb20456 SMb20492 SMb20493 SMb20511 SMb20662 SMb20692 SMb20693 SMb20750 SMb20871 SMb20974 SMb21010 SMb21111 SMb21159 SMb21348 SMb21383 SMb21474 SMc00136 SMc00165 SMc00260 SMc00264 SMc00268 SMc00372 SMc00553 SMc00572 SMc00603 SMc00733 SMc00778 SMc00880 SMc01157 SMc01175 SMc01500 SMc01571 SMc01635 SMc01698 SMc01955 SMc01991 SMc02034 SMc02037 SMc02041 SMc02271 SMc02322_2 SMc02336 SMc02339 SMc02486 SMc02522 SMc03878 SMc04391 BMEI0026 BMEI0032 BMEI0090 BMEI0268 BMEI0394 BMEI0395 BMEI0405 BMEI0406 BMEI0666 BMEI0861 BMEI1235 BMEI1250 BMEI1477 BMEI1489 BMEI1709 BMEI1832 BMEII0062 BMEII0063 BMEII0080 BMEII0283 BMEII0316 BMEII0514 BMEII0543 BMEII0816 BMEII0872 mll0352 mll0534 mll1017 mll1036 mll1830 mll1981 mll1982 mll2041 mll2118 mll2196 mll2271 mll2413 mll2989 mll2997 mll3081 mll3237 mll3372 mll3632 mll4054 mll4297 mll4781 mll4921 mll4989 mll5243 mll5433 mll5540 mll5766 mll6713 mll6717 mll6858 mll6862 mll7083 mll7191 mll7199 mll7289_2 mll7334 mll7371 mll7832 mll8174 mll8564 mlr0808 mlr1526 mlr1583 mlr1595 mlr1637 mlr1638 mlr1884 mlr1899 mlr2047 mlr2182 mlr2400 mlr2473 mlr2535 mlr2780 mlr2803 mlr2833 mlr3013 mlr3057 mlr3096 mlr3100 mlr3115 mlr3482 mlr3785 mlr3848 mlr4150 mlr4172 mlr4741 mlr5208 mlr5248 mlr5278 mlr5280 mlr5708_2 mlr5879 mlr5880 mlr6366 mlr6518 mlr6807 mlr6893 mlr7055 mlr7057 mlr7106 mlr7680 mlr7850 mlr7910 mlr9033 msl7784m CC0094 CC0124 CC0246 CC0398 CC0400 CC0417 CC0511 CC0644 CC0821 CC1286 CC1492 CC1571 CC1656 CC1675 CC1803 CC1804 CC1808 CC1816 CC2093 CC2306 CC2655 CC2836 CC2861 CC2966 CC2979 CC3076 CC3175 CC3380 CC3384 CC3685 RP035 RP762 RC0054 RC1183 RC1363 RC1364 CT237 CPn0296 CLUSTER 2 sll1376 alr1909 >COG1029 (Putative duplication confidence score 1.000) CLUSTER 1 AF1650 MA2878 CLUSTER 2 AF1929 MA0309 MA0834 MA1241 MA4178 MTH1559 MTH919 MJ1194m MK0259 MK1527 >COG1035 (Putative duplication confidence score 1.000) CLUSTER 1 AF1833 MA0978 MA3732 MA4220 MA4520_2 MTH1139_1 MTH1297 MTH280_1 MTH341 MJ0005_1 MJ0032 MJ0725 MJ0870_1 MJ1349 MK0322 MK0539 MK0799_1 MK0929 slr1923 all1601 SMb20252 CLUSTER 2 MTH193 >COG1036 (Putative duplication confidence score 0.750) CLUSTER 1 AF1518 MA3741 MTH697 MJ0730 CLUSTER 2 MA0696 MTH1379 MJ0208 MK1484 >COG1044 (Putative duplication confidence score 1.000) CLUSTER 1 aq_538 FN1909 slr0776 alr3074 lpxD ZlpxD ECs0181 YPO1054 STM0226 VC2250 PA3646 HI0915 PM1994 XF1045 NMB0180 NMA0087 RSc1414 HP0196 jhp0182 Cj0576 AGc2556 SMc02093 BMEI0831 mll0635 CC1913 RP009 RC0010 CT243 CPn0302 CLUSTER 2 XF0486 XF0918 XF1419 XF1646 >COG1053 (Putative duplication confidence score 0.700) CLUSTER 1 AF0681 AF1463 AF1670 VNG1306G MTH1502 MJ0033 MK0828 Ta1001 TVN0747 PAE0716 PAE2563 PAE2564 SSO2356 APE0950 YJL045w YKL148c SPAC1556.02c aq_594 TM0427 DR0952 CAC0104 Cgl0367 Rv0248c Rv1552 Rv3318 MT0262 MT1603 MT3419 ML0697 SA0995 BS_sdhA BH3092 slr1233 all2970 frdA sdhA ZfrdA ZsdhA ECs0748 ECs5135 YPO0360 YPO1111 STM0734 STM4343 VC2089 VC2656 PA1583 PA2298 HI0835 PM0201 XF1072 NMB0950 NMA1145 RSc1994 HP0192 jhp0178 Cj0409 Cj0437 AGc4792 SMc02349 SMc02465 BMEI0161 mll4263 mlr9192 CC3527 RP128 RC0170 CT592 CPn0789 CLUSTER 2 YEL047c YJR051w SPAC17A2.05 FN0050_2 Cgl2564 Cgl2581 Rv1817 Rv3537 MT1865 MT3641 L137630 lin0374 STM0691 PA2243 >COG1058 (Putative duplication confidence score 1.000) CLUSTER 1 AF2251 VNG0761G Ta0487 TVN0585 PH0439 PAB1305 PAE0875 SSO0103 APE1980 YMR178w TM0703_1 FN1929_1 DR2338_1 CAC3586_1 Rv1901_1 MT1952_1 ML2015_1 SPy2117_1 SP1941_1 SA1127 lin1434_1 BS_cinA_1 BH2385_1 slr0427_1 alr4808_1 yfaY Z3507 ECs3137 YPO1210 STM2293 VC1252 NMB2128 NMA0304 RSc1256 AGc3176 SMc00944 BMEI0937 mll0144 CC2674 CLUSTER 2 STM2288 >COG1061 (Putative duplication confidence score 1.000) CLUSTER 1 AF0358 VNG1406Gm VNG6130G VNG7093 MA1603_2 MA2403 MA2897 Ta1016 TVN0573 PH0210 PH0450 PH1064_1 PAB0128 PAB1312 PAE1611 PAE2446 SSO0473 SSO0959 SSO1879 APE1073 YDR332w YIL143c SPAC17A5.06 SPBC3B8.12 ECU01g1060 FN0448 FN1974_2 DRA0131_1 CAC2824_2 Cgl0793 Cgl1126_2 Cgl1533_2 Rv0861c MT0884 ML2157 SPy0669 SP0575 SA2276 SA2277_2 lin2589 all2951 all8075 alr4703 alr4909 alr7157 yejH_1 Z1129_2 Z1568_2 ZyejH_1 ECs1305_2 ECs3076_1 YPMT1.30 YPO1265_1 STM0900 STM2223_1 VC0812_2 VC1636_1 TP0380 CLUSTER 2 Cgl1868 Rv1179c_1 Rv2917 MT1217 MT2985 ML1624 >COG1066 (Putative duplication confidence score 1.000) CLUSTER 1 aq_1773 CLUSTER 2 aq_552 TM0199 FN0157 DR1105 CAC3188 Cgl2612 Rv3585 MT3691 L0303 SPy0236 SA0484 lin0265 BS_sms BH0104 slr0448 alr3823 sms Zsms ECs5347 YPO0443 STM4579 VC2343 PA4609 HI1597 PM0252 XF1378 NMB0782 NMA0992 RSc1372 HP0223 jhp0209 Cj1205c AGc1991 SMc00556 BMEI1486 mll7835 CC1660 RP546 RC0810 CT298 CPn0053 TP1022 >COG1071 (Putative duplication confidence score 0.500) CLUSTER 1 VNG1926G VNG2217G Ta1438 TVN0102 PAE2644 APE1677 DR0029 Rv2497c MT2572 L0033 SA1348 lin1044 lin1409 BS_bfmBAA BS_pdhA BH0213 BH2655 BH2763 PA2247 PA3417 RSc1797 AGl2716 SMb20020_1 SMc03201 BMEII0748 mll4473 CT340_1 CPn0033_1 MYPU_7640 MPN393 MG274 CLUSTER 2 SSO1369 SSO1525 YER178w SPAC26F1.03 ECU09g1040 Rv0843 MT0865 SPy1026 SP1164 BS_acoA BH0776 BH1822 slr1934 alr2708 PA4150 AGc2636 SMc01030 BMEI0854 BMEII0061_1 BMEII0216_1 mll3629 mlr0383 CC1726 RP261 RC0347 CT245 CPn0304 >COG1072 (Putative duplication confidence score 0.778) CLUSTER 1 TVN0137_2 Cgl0968 Rv1092c MT1124 ML1954 L66222 SPy1233 SP0839 lin0923 BS_yqjS BH2875 coaA ZcoaA ECs4901 YPO3758 STM4139 VC0320 HI0631 PM1747 AGc59 SMc02567 BMEI2039 mlr5019 CLUSTER 2 YFR007w SPAC227.14 yggC Z4273 ECs3804 AGc100 AGl262 SMc02167 BMEI1883 mll4957 >COG1073 (Putative duplication confidence score 1.000) CLUSTER 1 AF0675 AF1563 VNG1418C MA0077 MA0419 MA2933 MA3920 PAB2176 APE1244_1 YNL320w SPBC32H8.03 ECU09g0730 TM0336 FN0852 DR1053 DR1064 DR1915 DR1931 DR2248 DR2478 DR2551 DRB0023 CAC2725 CAC3022 CAC3407 CAC3665 Cgl1404_1 Rv2307c MT2364 L123536 L15267 SPy1892 lin1094 lin2180 lin2363 BS_yitV BS_yqkD BS_ytaP BH1308 BH2917 all8511 ycjY yfhR yjfP Z0347 Z0370 Z2442 Z2444 Z2445 Z3802 ZyjfP ECs0310 ECs0332 ECs1907 ECs1908 ECs1909 ECs3400 ECs5166 YPO2002 STM2547 STM4380 VCA0863_2 PA1680 PA2168 PA2218 PA3695 PA3829 PM1361 XF1745 XF1750 RSc0206 RSc1887_1 AGl2362 SMa0171 SMa1898_1 BMEI1884 mlr4383 mlr6657 CC0882 CT149 CT206 CPn0152 CPn0161 CLUSTER 2 yafA ZyafA ECs0266 YPO3224 STM0318 VC2276 >COG1076 (Putative duplication confidence score 0.600) CLUSTER 1 YGL018c SPAC144.08 ECU02g0690 sll0909 hscB ZyfhE ECs3393 YPO2893 YPO3641 STM0567 STM2540 BU604 VC0751 PA3811 HI0375 PM0321 NMB1383 NMA1598 RSc1023 RP201 RC0263 CLUSTER 2 djlA ZyabH ECs0060 YPO0496 STM0094 VC0447 PA0598 HI0271 PM1878 Cj0954c AGc3834 SMc01853 BMEI0564 mll1571 mll4676 CC2134 >COG1079 (Putative duplication confidence score 1.000) CLUSTER 1 AF0889 VNG0897G PH1711 PAB0305 PAE3118 PAE3411 APE0067 APE2586 TM0105 DR0251 CAC0705 L167877 SPy1225 SP0848 lin1428 BS_yufQ alr5368 PA0138 RSc2175 AGc207 AGc3294 SMa1514 SMa2123 SMa2369 SMb20125 SMc00244 SMc04125 BMEII0087 BMEII0701 mll0502 mll4174 mlr3157 mlr6804 mlr7063 TP0302 TP0323 BB0679 UU013 MYPU_6170 MPN260 MG121 CLUSTER 2 BB0316 >COG1085 (Putative duplication confidence score 1.000) CLUSTER 1 AF1331 MA3680 PH0365 PAE1184 YBR018c SPBPB2B2.10c TM0896 TM1191 CAC2844 Cgl2030 Rv0619 L51063 galT ZgalT ECs0786 YPO1138 STM0775 VC1596 HI0820 PM1036 CLUSTER 2 Rv0618 >COG1094 (Putative duplication confidence score 1.000) CLUSTER 1 AF1805 VNG2227C MA0893 MTH1006 MJ0443 MK0513 Ta0397 TVN1176 PH1566 PAB0406 PAE3473 SSO2373 APE0754 YOR145c SPAC2C4.11c ECU11g0750 CLUSTER 2 YCL059c SPBC25B2.05 ECU04g0510 >COG1103 (Putative duplication confidence score 0.500) CLUSTER 1 AF0028 MA0722 CLUSTER 2 AF0181 MTH1067 MJ1678 MK0229 >COG1104 (Putative duplication confidence score 1.000) CLUSTER 1 AF0186 AF0564 MA0808 MA2718 MA3264 YCL017c SPBC21D10.11c ECU11g1770 aq_1053 aq_739 TM1692 FN0058 DR0215 CAC2234 CAC2972 Cgl1043 Cgl1203 Rv3025c MT3109 ML1708 L111126 L122222 SPy0816 SPy1122 SP0880 SP1094 SA1450 SA1538 lin1548 lin1635 lin2130 BS_nifS BS_nifZ BS_yrvO BH1217 BH1260 BH3204 sll0704 slr0387 all1457 alr2505 alr3088 yfhO ZyfhO ECs3396 YPO2138 YPO2896 STM2543 BU602 VC0748 PA2062 PA3814 HI0378 PM0318 NMB1379 NMA1594 RSc1019 RSp0173 HP0220 jhp0206 Cj0240c AGc3350 SMc00529 BMEI1043 mll5865 mlr0015 CC1865 RP486 RP487 RC0730 RC0731 CT258 CPn0396 TP0863 CLUSTER 2 CT721 CPn0862 >COG1107 (Putative duplication confidence score 1.000) CLUSTER 1 AF1337 VNG0779C MA0917 MTH763 MJ1198 MK0157 PH0340 PAB1284 CLUSTER 2 VNG1511C >COG1110 (Putative duplication confidence score 1.000) CLUSTER 1 AF1024 MJ1512_3 MK0289 PH0800_1 PH0800_3 PAB2423 PAE1108 SSO0420 SSO0963 APE1340 APE1376 aq_1159 aq_886 TM0173 CLUSTER 2 MJ1512_1 MK0049 >COG1112 (Putative duplication confidence score 1.000) CLUSTER 1 AF1388 AF1960 VNG1501G VNG2167G MA3490 MTH1634 MTH487 MJ0104 MK0070 Ta1398 PH0109_2 PH0909 PAB0067_2 PAB1561 SSO1456 YER176w YHR164c YKL017c YLR430w YMR080c SPAC16C9.06c SPAC6G9.10c SPBC16D10.04c SPBC29A10.10c SPCC1739.03 SPCC737.07c ECU05g1110 ECU09g1800 ECU10g1640 aq_2057 aq_791 TM0005 TM0618 TM1411_2 FN0949 FN1445 CAC3036 Rv1251c_2 MT1290_2 ML1098_2 SA0089 sll1582 yjhR Z1202 Z1642 ECs1384 STM4489 PA2727_3 XF2409 HP0435 HP0447 RC1124 RC1125 RC1126 UU389 UU571 MYPU_1220 MPN153 MG140 CLUSTER 2 PA2728 >COG1113 (Putative duplication confidence score 1.000) CLUSTER 1 CAC0727 CAC1472 Cgl0463 Cgl1083 Cgl1129 Rv0346c Rv0522 Rv1704c Rv2127 MT0361 MT0544 MT1744 MT2186 ML1304 ML1305 L160176 L161441 L18622 L73435 SPy1654 SA1519 SA2109 SA2226 SA2227 lin0780 BS_aapA BS_gabP BS_ybxG BS_ycgH BS_ydgF BS_ytnA BS_yvbW BH2171 ansP aroP cycA gabP pheP proY yifK ZansP ZaroP ZcycA ZgabP ZpheP ZproY ZyifK ECs0116 ECs0452 ECs0614 ECs2057 ECs3524 ECs4729 ECs5186 YPO1743 YPO1859 YPO1937 YPO3201 YPO3421 YPO3854 YPO4015 STM0150 STM0400 STM0568 STM1584 STM2793 STM3930 STM4398 PA0129 PA0789 PA0866 PA2079 PA3000 PA5097 AGl2082 BMEII0038 CLUSTER 2 Cgl0998 >COG1117 (Putative duplication confidence score 1.000) CLUSTER 1 AF1359 VNG0452G VNG2482G MA0890 MTH1731 MJ1012 MK1687 PAB0700 PAE1393 SSO0488 APE0050 aq_1055 TM1261 DRA0160 CAC1708 Cgl2518 Rv0820 Rv0933 MT0842 MT0960 ML2189 L154481 L155408 SPy1241 SPy1242 SP1396 SP1397 SP2087 SA1218 lin2638 lin2639 BS_yqgJ BS_yqgK BH2991 sll0683 sll0684 slr1250 all0907 all0908 all4572 pstB ZpstB ECs4661 YPO2833 YPO4114 STM3854 VC0726 VCA0073 PA5366 HI1380 PM0433 XF2144 RSc1532 Cj0616 AGc743 SMc02142 BMEI1986 mll3719 CC0292 BB0218 UU200 MPN609 MG410 CLUSTER 2 BS_yjkB >COG1118 (Putative duplication confidence score 1.000) CLUSTER 1 Rv1859 MT1907 Z4271 ECs3803 STM3075 CLUSTER 2 Rv2397c MT2468 BH3130 sll0739_2 slr1455 all0126 alr2433_2 cysA ZcysA ECs3293 YPO3012 STM2441 VC0541 PA0280 XF1347 NMB0879 NMA1097 RSc1347 RSp1145 HP0475 jhp0427 Cj0300c AGc1506 AGl2655 SMa2067 SMb21130 BMEI1838 mlr1669 CC1598 >COG1120 (Putative duplication confidence score 1.000) CLUSTER 1 AF0430 AF1401 VNG1371Gm VNG2552G VNG2558G MA0950 MA1132 MA1198 MA1233 MA2150 MA2776 MA3358 MA3453 MA3642 MA3919 MA3933 MA4532 MA4606 MJ0089 MJ0873 Ta1410 TVN1429 PH0791 PH1235 PAB0678 PAB1536 SSO0487 APE1055 TM0078 TM0191 FN0302 FN0307 FN0770 FN0817 FN0882 FN1968 DR2590 DRB0121 CAC0791 CAC1989 CAC2443 Cgl0038 Cgl0491 Cgl0646 Cgl0655 Cgl1590 Cgl2059 Cgl2784 SPy0386 SPy1793 SP1035 SA0602 lin2074 lin2286 lin2523 BS_fhuC BS_yfmF BS_yusV BS_yvrA_1 BH1039 BH1081 BH1587_1 BH3292 BH3295 slr1318 all0389 all2584 alr3241 alr4033 fecE fepC fhuC Z1964 Z4385 ZfepC ZfhuC ECs01